HHsearch alignment for GI: 254780709 and conserved domain: PRK13889

>PRK13889 conjugal transfer relaxase TraA; Provisional.
Probab=95.78  E-value=0.14  Score=31.34  Aligned_cols=107  Identities=23%  Similarity=0.225  Sum_probs=68.3

Q ss_pred             CCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             67412311354444424789999999852267426774345124568899999753035321223586612454228999
Q gi|254780709|r  109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ  188 (321)
Q Consensus       109 ~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~  188 (321)
T Consensus       360 ~~~~iavVvG~AGtGKStmL~aAReawEa~GyrV~GaALs---GkAAegLe~---~sGI~SrT------lA-----s~e~  422 (992)
T PRK13889        360 DGRDLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALS---GIAAENLEG---GSGIASRT------IA-----SLEH  422 (992)
T ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCC---HHHHHHHHH---CCCCCCHH------HH-----HHHH
T ss_conf             7897589983388878899999999999779889811500---689997653---47943167------99-----9999


Q ss_pred             HH------HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC
Q ss_conf             96------514875998654333211577899998998763022234301123102335
Q gi|254780709|r  189 AQ------AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT  241 (321)
Q Consensus       189 a~------~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~  241 (321)
T Consensus       423 ~w~~g~~~L~~~dVlVVDEAGM--VgSRqMarll~~Ae~A-------GAKVVLVGD~~Q  472 (992)
T PRK13889        423 GWGQGRDLLTARDVLVIDEAGM--VGTRQLERVLSHAADA-------GAKVVLVGDPQQ  472 (992)
T ss_pred             HHHCCCCCCCCCCEEEEECCCC--CCHHHHHHHHHHHHHC-------CCEEEEECCHHH
T ss_conf             8746733478985899967655--7749999999999984-------998999488777