HHsearch alignment for GI: 254780709 and conserved domain: TIGR00073

>TIGR00073 hypB hydrogenase accessory protein HypB; InterPro: IPR004392 The hydrogenase accessory protein HypB is a GTP hydrolase for assembly of nickel metallocentre of hydrogenase. A similar protein, ureG, is an accessory protein for urease, which also uses nickel.; GO: 0016151 nickel ion binding, 0006461 protein complex assembly.
Probab=97.39  E-value=0.00045  Score=48.87  Aligned_cols=144  Identities=23%  Similarity=0.351  Sum_probs=97.9

Q ss_pred             CCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC---CHHHHH-
Q ss_conf             6674123113544444247899999998522674267743451245688999997530353212235866---124542-
Q gi|254780709|r  108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD---AAALAY-  183 (321)
Q Consensus       108 ~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~d---p~~v~~-  183 (321)
T Consensus        31 ~~g~~~lNfmsspGSGKT~LiEk~~~~~~~~-~K~Avi~GD~~t~~DA~RlR~~----G~~a~~~nTGk~CHLdA~mv~G  105 (225)
T TIGR00073        31 KEGLLVLNFMSSPGSGKTTLIEKLIERLDDE-VKIAVIEGDVQTKNDADRLRKY----GVPAIQINTGKECHLDAHMVAG  105 (225)
T ss_pred             HCCCEEEEECCCCCCCHHHHHHHHHHHHCCC-CCEEEEECCHHHHHHHHHHHHC----CCEEEEECCCCCCCCHHHHHHH
T ss_conf             6597899802588611589999999984578-9789997553225569999864----9868863688644401667865


Q ss_pred             --HHHHHHHHHCC-CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHH-HHHHHHHHHCCCC
Q ss_conf             --28999965148-7599865433321157789999899876302223430112310233522577-8999876435897
Q gi|254780709|r  184 --EAFKQAQAKKV-DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL-RQVEMFHAVAGTT  259 (321)
Q Consensus       184 --~a~~~a~~~~~-DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~-~~a~~F~~~~~~~  259 (321)
T Consensus       106 ~~~~L~~~~ld~~~DlL~IENVGN------Lv---------CP~~FdLGe~~rVvllSVTEGdDk~lKyP~~F~~A---d  167 (225)
T TIGR00073       106 AIHALKDLPLDDISDLLLIENVGN------LV---------CPADFDLGEHMRVVLLSVTEGDDKVLKYPAMFKEA---D  167 (225)
T ss_pred             HHHHHHCCCCCCCCCEEEEEECCC------CE---------ECCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHH---H
T ss_conf             875542168887146268864476------10---------06731123563079998658999654661588744---4


Q ss_pred             EEEEECCCCCCCHHH
Q ss_conf             699965457870699
Q gi|254780709|r  260 GLIMTKMDGTARGGG  274 (321)
Q Consensus       260 g~I~TKlD~ta~~G~  274 (321)
T Consensus       168 ~~~inK~DL~~~v~~  182 (225)
T TIGR00073       168 LILINKVDLAEAVGF  182 (225)
T ss_pred             HHHHCHHHHHHHHCC
T ss_conf             562147889977073