HHsearch alignment for GI: 254780709 and conserved domain: TIGR00073
>TIGR00073 hypB hydrogenase accessory protein HypB; InterPro: IPR004392 The hydrogenase accessory protein HypB is a GTP hydrolase for assembly of nickel metallocentre of hydrogenase. A similar protein, ureG, is an accessory protein for urease, which also uses nickel.; GO: 0016151 nickel ion binding, 0006461 protein complex assembly.
Probab=97.39 E-value=0.00045 Score=48.87 Aligned_cols=144 Identities=23% Similarity=0.351 Sum_probs=97.9
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC---CHHHHH-
Q ss_conf 6674123113544444247899999998522674267743451245688999997530353212235866---124542-
Q gi|254780709|r 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD---AAALAY- 183 (321)
Q Consensus 108 ~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~d---p~~v~~- 183 (321)
T Consensus 31 ~~g~~~lNfmsspGSGKT~LiEk~~~~~~~~-~K~Avi~GD~~t~~DA~RlR~~----G~~a~~~nTGk~CHLdA~mv~G 105 (225)
T TIGR00073 31 KEGLLVLNFMSSPGSGKTTLIEKLIERLDDE-VKIAVIEGDVQTKNDADRLRKY----GVPAIQINTGKECHLDAHMVAG 105 (225)
T ss_pred HCCCEEEEECCCCCCCHHHHHHHHHHHHCCC-CCEEEEECCHHHHHHHHHHHHC----CCEEEEECCCCCCCCHHHHHHH
T ss_conf 6597899802588611589999999984578-9789997553225569999864----9868863688644401667865
Q ss_pred --HHHHHHHHHCC-CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHH-HHHHHHHHHCCCC
Q ss_conf --28999965148-7599865433321157789999899876302223430112310233522577-8999876435897
Q gi|254780709|r 184 --EAFKQAQAKKV-DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL-RQVEMFHAVAGTT 259 (321)
Q Consensus 184 --~a~~~a~~~~~-DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~-~~a~~F~~~~~~~ 259 (321)
T Consensus 106 ~~~~L~~~~ld~~~DlL~IENVGN------Lv---------CP~~FdLGe~~rVvllSVTEGdDk~lKyP~~F~~A---d 167 (225)
T TIGR00073 106 AIHALKDLPLDDISDLLLIENVGN------LV---------CPADFDLGEHMRVVLLSVTEGDDKVLKYPAMFKEA---D 167 (225)
T ss_pred HHHHHHCCCCCCCCCEEEEEECCC------CE---------ECCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHH---H
T ss_conf 875542168887146268864476------10---------06731123563079998658999654661588744---4
Q ss_pred EEEEECCCCCCCHHH
Q ss_conf 699965457870699
Q gi|254780709|r 260 GLIMTKMDGTARGGG 274 (321)
Q Consensus 260 g~I~TKlD~ta~~G~ 274 (321)
T Consensus 168 ~~~inK~DL~~~v~~ 182 (225)
T TIGR00073 168 LILINKVDLAEAVGF 182 (225)
T ss_pred HHHHCHHHHHHHHCC
T ss_conf 562147889977073