>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345 These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .

Probab=96.35 E-value=0.019 Score=37.50 Aligned_cols=173 Identities=21% Similarity=0.225 Sum_probs=89.8 Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCC-C-----------CEEEEECCCCCHHHHHHHHHHHHHHCCCCCCC-CCCCC Q ss_conf 41231135444442478999999985226-7-----------42677434512456889999975303532122-35866 Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAG-L-----------KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-EIGSD 177 (321) Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g-~-----------kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~-~~~~d 177 (321) T Consensus 365 ~Kv~iLTGGPGTGKtT~t~~i~~~~~~~~gl~l~~~~~vndd~~v~LaAPTGrAAk--Rl~E~TG~~a~TIHRLlG~~~~ 442 (769) T TIGR01448 365 DKVVILTGGPGTGKTTITKAIIELYEELKGLDLDKDDYVNDDLPVVLAAPTGRAAK--RLAEVTGLEALTIHRLLGYGSD 442 (769) T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHH--HCCCCCCCHHHHHHHHHCCCCC T ss_conf 94899857788861689999999998716877553124567764887377437888--5110026212347786368988 Q ss_pred CHHHHHH-HHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC--EEEEECCCCC------CHHHHHH Q ss_conf 1245422-89999651487599865433321157789999899876302223430--1123102335------2257789 Q gi|254780709|r 178 AAALAYE-AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH--SVLQVLDATT------GQNALRQ 248 (321) Q Consensus 178 p~~v~~~-a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~--~~~lVlda~~------gq~~~~~ 248 (321) T Consensus 443 --~~~~~k~~~--~~~~~DL~IvDE~SM--~Dt~L~~~lL~a----------~P~~a~lllVGD~DQLPSV~pG~VL~DL 506 (769) T TIGR01448 443 --TKSENKNLE--DPIDADLLIVDESSM--VDTWLASSLLAA----------VPDHARLLLVGDADQLPSVGPGQVLKDL 506 (769) T ss_pred --CCCCCHHHC--CCCCCCEEEEECCCH--HHHHHHHHHHHH----------CCCCCEEEEECCCCCCCCCCCCHHHHHH T ss_conf --873211011--347877699814621--889999999861----------7977779888376888988644089999 Q ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEE-EEECCCCCCCCCCCCHHH Q ss_conf 998764358976999654578706999999999769889-997589813255577899 Q gi|254780709|r 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY-FLGVGEGINDLEPFVAKD 305 (321) Q Consensus 249 a~~F~~~~~~~g~I~TKlD~ta~~G~~ls~~~~~~~Pi~-fig~Ge~i~Dl~~f~~~~ 305 (321) T Consensus 507 i~--s~~iP~--~~LT~vyRQ~~~S~Ii~~Ah~~~~G~~Pvlnss~~~~Df~~~~~~~ 560 (769) T TIGR01448 507 IQ--SKVIPV--TRLTKVYRQAEGSSIITLAHKILQGEAPVLNSSSAKKDFKFLKLDR 560 (769) T ss_pred HH--CCCCCE--EECCCEEEECCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 84--688661--2121112411366467888987317887523244676677776400

HHsearch alignment for GI: 254780709 and conserved domain: TIGR01448