HHsearch alignment for GI: 254780709 and conserved domain: TIGR02237
>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939 This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=95.89 E-value=0.04 Score=35.25 Aligned_cols=88 Identities=18% Similarity=0.221 Sum_probs=54.1
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC-CCHHHHHHHHHHHHHHCCC---------CCCCCCCCCCHHHH
Q ss_conf 2311354444424789999999852267426774345-1245688999997530353---------21223586612454
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT-FRSAAIDQLKIWADRTSAD---------FVCSEIGSDAAALA 182 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~Dt-fR~aA~eQL~~~a~~~~v~---------~~~~~~~~dp~~v~ 182 (321)
T Consensus 14 iTQiYGp~G~GKTn~c~~~a~~a~~~Gk~v~YiDTEGGLS~---ER~~q~~~~~~~D~e~~~~~~iv~~~~~f~eQ~~ai 90 (223)
T TIGR02237 14 ITQIYGPPGSGKTNICLILAVNAARQGKKVVYIDTEGGLSP---ERFKQIAEDRALDPERVLSNVIVFEVFDFDEQEVAI 90 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHH---HHHHHHHHCCCCCHHHHHCCEEEECCCCHHHHHHHH
T ss_conf 88987589986789999999999861895899962898328---999998630588988884153552353567899999
Q ss_pred HHHHHHHHHH--CCCEEEEECCC
Q ss_conf 2289999651--48759986543
Q gi|254780709|r 183 YEAFKQAQAK--KVDVLIIDTAG 203 (321)
Q Consensus 183 ~~a~~~a~~~--~~DvvliDTAG 203 (321)
T Consensus 91 ~~~~~~~~~~G~~~~LvVvDs~t 113 (223)
T TIGR02237 91 QKTSKLIDRDGDKADLVVVDSFT 113 (223)
T ss_pred HHHHHHHHCCCCEEEEEEEECCH
T ss_conf 99999986068833148881533