HHsearch alignment for GI: 254780709 and conserved domain: TIGR02538

>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB; InterPro: IPR013374 This model describes a protein involved in type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly, and is closely related to GspE (IPR013369 from INTERPRO) of type II secretion systems (also referred to as the main terminal branch of the general secretion pathway). Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0009297 pilus biogenesis.
Probab=96.08  E-value=0.0026  Score=43.54  Aligned_cols=75  Identities=21%  Similarity=0.435  Sum_probs=44.9

Q ss_pred             CCCC-EEECCCCCCCCHHHHHHHHHHHHHHCCC-CEEEEECC---CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
Q ss_conf             6741-2311354444424789999999852267-42677434---51245688999997530353212235866124542
Q gi|254780709|r  109 HRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGL-KVMLAAGD---TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY  183 (321)
Q Consensus       109 ~~p~-vil~vG~nG~GKTTT~aKLA~~~~~~g~-kV~lva~D---tfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~  183 (321)
T Consensus       323 ~kPqGMvLVTGPTGSGKTVSLYTa---LniLN~~~~NISTAEDPVEINLpGINQVnvN-pK~GLTF------------A-  385 (577)
T TIGR02538       323 HKPQGMVLVTGPTGSGKTVSLYTA---LNILNTEEVNISTAEDPVEINLPGINQVNVN-PKIGLTF------------A-  385 (577)
T ss_pred             HCCCCCEEEECCCCCCHHHHHHHH---HCCCCCCCCCCCCCCCCEEEEECCCCEECCC-CCCCCCH------------H-
T ss_conf             079972886266598416878763---1125776745011447724640771512046-6788787------------9-


Q ss_pred             HHHHHHHHHCCCEEEEE
Q ss_conf             28999965148759986
Q gi|254780709|r  184 EAFKQAQAKKVDVLIID  200 (321)
Q Consensus       184 ~a~~~a~~~~~DvvliD  200 (321)
T Consensus       386 aALrSFLRQDPDIIMVG  402 (577)
T TIGR02538       386 AALRSFLRQDPDIIMVG  402 (577)
T ss_pred             HHHHHHCCCCCCEEEEE
T ss_conf             99986406899889870