HHsearch alignment for GI: 254780709 and conserved domain: TIGR02538
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB; InterPro: IPR013374 This model describes a protein involved in type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly, and is closely related to GspE (IPR013369 from INTERPRO) of type II secretion systems (also referred to as the main terminal branch of the general secretion pathway). Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0009297 pilus biogenesis.
Probab=96.08 E-value=0.0026 Score=43.54 Aligned_cols=75 Identities=21% Similarity=0.435 Sum_probs=44.9
Q ss_pred CCCC-EEECCCCCCCCHHHHHHHHHHHHHHCCC-CEEEEECC---CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
Q ss_conf 6741-2311354444424789999999852267-42677434---51245688999997530353212235866124542
Q gi|254780709|r 109 HRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGL-KVMLAAGD---TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183 (321)
Q Consensus 109 ~~p~-vil~vG~nG~GKTTT~aKLA~~~~~~g~-kV~lva~D---tfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~ 183 (321)
T Consensus 323 ~kPqGMvLVTGPTGSGKTVSLYTa---LniLN~~~~NISTAEDPVEINLpGINQVnvN-pK~GLTF------------A- 385 (577)
T TIGR02538 323 HKPQGMVLVTGPTGSGKTVSLYTA---LNILNTEEVNISTAEDPVEINLPGINQVNVN-PKIGLTF------------A- 385 (577)
T ss_pred HCCCCCEEEECCCCCCHHHHHHHH---HCCCCCCCCCCCCCCCCEEEEECCCCEECCC-CCCCCCH------------H-
T ss_conf 079972886266598416878763---1125776745011447724640771512046-6788787------------9-
Q ss_pred HHHHHHHHHCCCEEEEE
Q ss_conf 28999965148759986
Q gi|254780709|r 184 EAFKQAQAKKVDVLIID 200 (321)
Q Consensus 184 ~a~~~a~~~~~DvvliD 200 (321)
T Consensus 386 aALrSFLRQDPDIIMVG 402 (577)
T TIGR02538 386 AALRSFLRQDPDIIMVG 402 (577)
T ss_pred HHHHHHCCCCCCEEEEE
T ss_conf 99986406899889870