HHsearch alignment for GI: 254780709 and conserved domain: TIGR02903

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family; InterPro: IPR014252 This entry shows some relation to the widely distributed ATP-dependent protease La, also called Lon or LonA (IPR004815 from INTERPRO), but is more closely related to LonB (IPR014251 from INTERPRO), a LonA paralog found only in endospore-forming bacteria. Proteins in this entry are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ). They are restricted to a subset of endospore-forming species, and probably participate in the program of endospore formation. We propose the designation LonC..
Probab=96.74  E-value=0.013  Score=38.55  Aligned_cols=82  Identities=28%  Similarity=0.377  Sum_probs=40.3

Q ss_pred             CCEEECCCCCCCCHHHHHHHHHHH-HHHCCCCE-----EEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf             412311354444424789999999-85226742-----677434512456889999975303532122358661245422
Q gi|254780709|r  111 PHVILVVGVNGVGKTTVIGKLSKK-MSDAGLKV-----MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE  184 (321)
Q Consensus       111 p~vil~vG~nG~GKTTT~aKLA~~-~~~~g~kV-----~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~  184 (321)
T Consensus       176 PQHiiLYGPPGVGKTT-aARl~LEe~K~~~~tPF~~DA~FvEVDG------tTLRWDPREvTNPLLGSVH--DPI---YQ  243 (616)
T TIGR02903       176 PQHIILYGPPGVGKTT-AARLALEEAKKLKNTPFAEDAPFVEVDG------TTLRWDPREVTNPLLGSVH--DPI---YQ  243 (616)
T ss_pred             CCCEEEECCCCCCHHH-HHHHHHHHCCCCCCCCCCCCCCEEEECC------CCCCCCCCCCCCCCCCCCC--CCC---CC
T ss_conf             6607855733884789-9999876213687447611378575157------6266774101477677625--765---56


Q ss_pred             HHHH--HH-------------HHCCCEEEEECCCCC
Q ss_conf             8999--96-------------514875998654333
Q gi|254780709|r  185 AFKQ--AQ-------------AKKVDVLIIDTAGRL  205 (321)
Q Consensus       185 a~~~--a~-------------~~~~DvvliDTAGR~  205 (321)
T Consensus       244 Ga~RDLAE~GvPEPk~GLVT~AHG-GvLFIDEIGEL  278 (616)
T TIGR02903       244 GARRDLAETGVPEPKLGLVTDAHG-GVLFIDEIGEL  278 (616)
T ss_pred             CCCHHHCCCCCCCCCCCCCCCCCC-CEEEEECHHHH
T ss_conf             764011047879898987100477-56765021122