HHsearch alignment for GI: 254780709 and conserved domain: TIGR03015
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.61 E-value=0.00063 Score=47.85 Aligned_cols=143 Identities=24% Similarity=0.305 Sum_probs=84.1
Q ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH-
Q ss_conf 7412311354444424789999999852267426774345124568899999753035321223586612454228999-
Q gi|254780709|r 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ- 188 (321)
Q Consensus 110 ~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~- 188 (321)
T Consensus 42 ~~g~~lltGe~GtGKTtllr~l~~~l~~~~~~~~~i~~-~-~l~~~~ll~~i~~~lg~~~~-~~---~~~~~-~~~l~~~ 114 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVN-T-RVDAEDLLRMVAADFGLETE-GR---DKAAL-LRELEDF 114 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECC-C-CCCHHHHHHHHHHHCCCCCC-CC---CHHHH-HHHHHHH
T ss_conf 89659997299898899999999845934548999769-9-99999999999998598988-98---99999-9999999
Q ss_pred ---HH-HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHH------HHHHHHHHCCC
Q ss_conf ---96-514875998654333211577899998998763022234301123102335225778------99987643589
Q gi|254780709|r 189 ---AQ-AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR------QVEMFHAVAGT 258 (321)
Q Consensus 189 ---a~-~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~------~a~~F~~~~~~ 258 (321)
T Consensus 115 L~~~~~~g~~~vliIDEAq~L~--~~~Le~Lr~L~n~e~--~~~~ll~ii-----L~GqpeL~~~L~~~~~~~l~qRI~~ 185 (269)
T TIGR03015 115 LIEQFAAGKRALLVVDEAQNLT--PELLEELRMLSNFQT--DNAKLLQIF-----LVGQPEFRETLQSPQLQQLRQRIIA 185 (269)
T ss_pred HHHHHHCCCCEEEEEECHHHCC--HHHHHHHHHHHCCCC--CCCCCEEEE-----EECCHHHHHHHCCCCHHHHHHCEEE
T ss_conf 9999966994699972422199--999999999970135--888704899-----9578679998727402545550767
Q ss_pred CEEEEECCCCC
Q ss_conf 76999654578
Q gi|254780709|r 259 TGLIMTKMDGT 269 (321)
Q Consensus 259 ~g~I~TKlD~t 269 (321)
T Consensus 186 -~~~L~pl~~e 195 (269)
T TIGR03015 186 -SCHLGPLDRE 195 (269)
T ss_pred -EEEECCCCHH
T ss_conf -9984799989