HHsearch alignment for GI: 254780709 and conserved domain: TIGR03346
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.75 E-value=0.0031 Score=43.03 Aligned_cols=129 Identities=16% Similarity=0.151 Sum_probs=64.8
Q ss_pred CCCCC-CEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC-CCCCCCCCCHHHHHH
Q ss_conf 36674-1231135444442478999999985226742677434512456889999975303532-122358661245422
Q gi|254780709|r 107 FSHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-VCSEIGSDAAALAYE 184 (321)
Q Consensus 107 ~~~~p-~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~-~~~~~~~dp~~v~~~ 184 (321)
T Consensus 590 dp~rP~GsFlf~GptGvGKTELAKaLAe~Lfg~~~~LIriDMSEy-----~E~hsvsrLiGaPPGYVGy~---egG~Lte 661 (852)
T TIGR03346 590 DPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEY-----MEKHSVARLIGAPPGYVGYE---EGGQLTE 661 (852)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHHH-----CCHHHHHHHCCCCCCCCCCC---CCCEECH
T ss_conf 899974589986788776899999999998558520698430443-----01224778558999767768---7874239
Q ss_pred HHHHHHHHCCCEEEEECCCCCCCH-HHHHHHHHHHHHHHHCCC-CCCCCEEEEECCCCCCHHHH
Q ss_conf 899996514875998654333211-577899998998763022-23430112310233522577
Q gi|254780709|r 185 AFKQAQAKKVDVLIIDTAGRLHNN-SILMAGIGKMIRVLKRLD-PHAPHSVLQVLDATTGQNAL 246 (321)
Q Consensus 185 a~~~a~~~~~DvvliDTAGR~~~~-~~lm~EL~ki~~v~~~~~-~~~p~~~~lVlda~~gq~~~ 246 (321)
T Consensus 662 ~v---r~~PysVvL~DEIEKAh~~V~~~lLQilD~G~ltD~~Gr~vdF~NtiiimTSN~Ga~~i 722 (852)
T TIGR03346 662 AV---RRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFI 722 (852)
T ss_pred HH---HHCCCEEEEECCHHHHCHHHHHHHHHHHCCCEEECCCCCEEEEEEEEEEEECCCCHHHH
T ss_conf 89---81988799853054307689999998823674307999888535568986154065999