HHsearch alignment for GI: 254780709 and conserved domain: TIGR03346

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.75  E-value=0.0031  Score=43.03  Aligned_cols=129  Identities=16%  Similarity=0.151  Sum_probs=64.8

Q ss_pred             CCCCC-CEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC-CCCCCCCCCHHHHHH
Q ss_conf             36674-1231135444442478999999985226742677434512456889999975303532-122358661245422
Q gi|254780709|r  107 FSHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-VCSEIGSDAAALAYE  184 (321)
Q Consensus       107 ~~~~p-~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~-~~~~~~~dp~~v~~~  184 (321)
T Consensus       590 dp~rP~GsFlf~GptGvGKTELAKaLAe~Lfg~~~~LIriDMSEy-----~E~hsvsrLiGaPPGYVGy~---egG~Lte  661 (852)
T TIGR03346       590 DPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEY-----MEKHSVARLIGAPPGYVGYE---EGGQLTE  661 (852)
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHHH-----CCHHHHHHHCCCCCCCCCCC---CCCEECH
T ss_conf             899974589986788776899999999998558520698430443-----01224778558999767768---7874239


Q ss_pred             HHHHHHHHCCCEEEEECCCCCCCH-HHHHHHHHHHHHHHHCCC-CCCCCEEEEECCCCCCHHHH
Q ss_conf             899996514875998654333211-577899998998763022-23430112310233522577
Q gi|254780709|r  185 AFKQAQAKKVDVLIIDTAGRLHNN-SILMAGIGKMIRVLKRLD-PHAPHSVLQVLDATTGQNAL  246 (321)
Q Consensus       185 a~~~a~~~~~DvvliDTAGR~~~~-~~lm~EL~ki~~v~~~~~-~~~p~~~~lVlda~~gq~~~  246 (321)
T Consensus       662 ~v---r~~PysVvL~DEIEKAh~~V~~~lLQilD~G~ltD~~Gr~vdF~NtiiimTSN~Ga~~i  722 (852)
T TIGR03346       662 AV---RRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFI  722 (852)
T ss_pred             HH---HHCCCEEEEECCHHHHCHHHHHHHHHHHCCCEEECCCCCEEEEEEEEEEEECCCCHHHH
T ss_conf             89---81988799853054307689999998823674307999888535568986154065999