HHsearch alignment for GI: 254780709 and conserved domain: TIGR03420
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.65 E-value=0.015 Score=38.14 Aligned_cols=135 Identities=8% Similarity=0.110 Sum_probs=71.3
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 12311354444424789999999852267426774345124568899999753035321223586612454228999965
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~ 191 (321)
T Consensus 39 ~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~~~~~~~~~~~~l~~------------------------------l 88 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQADPEVLEG------------------------------L 88 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHH------------------------------C
T ss_conf 8699989999988999999999986269957995299987753999972------------------------------7
Q ss_pred HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHH-----HHHHHHHHCCCCEEEEECC
Q ss_conf 14875998654333211577899998998763022234301123102335225778-----9998764358976999654
Q gi|254780709|r 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR-----QVEMFHAVAGTTGLIMTKM 266 (321)
Q Consensus 192 ~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~-----~a~~F~~~~~~~g~I~TKl 266 (321)
T Consensus 89 ~~~d~l~iDDi~~i~~~~~~e~~lF~l~N~~~---~---~~~~ilits~~~p~~l~~~l~dL~SRl~~---~~~~~I~~p 159 (226)
T TIGR03420 89 EQADLVCLDDVEAIAGQPEWQEALFHLYNRVR---E---AGGRLLIAGRAAPAQLPLRLPDLRTRLAW---GLVFQLPPL 159 (226)
T ss_pred CCCCEEEEECHHHHCCCHHHHHHHHHHHHHHH---H---HCCEEEEECCCCHHHCCCCHHHHHHHHHC---CCEEECCCC
T ss_conf 44899999663334378378999999999998---6---52828986788823203201779999968---856852799
Q ss_pred CCCCCHHHHHHHHHHHCCC
Q ss_conf 5787069999999997698
Q gi|254780709|r 267 DGTARGGGLIPIVVTHKIP 285 (321)
Q Consensus 267 D~ta~~G~~ls~~~~~~~P 285 (321)
T Consensus 160 dd~~~~~iL~k~~~~r~i~ 178 (226)
T TIGR03420 160 SDEEKIAALQSRAARRGLQ 178 (226)
T ss_pred CHHHHHHHHHHHHHHCCCC
T ss_conf 9999999999999985998