HHsearch alignment for GI: 254780709 and conserved domain: cd01120
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.83 E-value=0.00017 Score=51.78 Aligned_cols=95 Identities=24% Similarity=0.231 Sum_probs=58.3
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH---HCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 2311354444424789999999852267426774345124568899999753---0353212235866124542289999
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR---TSADFVCSEIGSDAAALAYEAFKQA 189 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~---~~v~~~~~~~~~dp~~v~~~a~~~a 189 (321)
T Consensus 1 ~~li~g~~g~GKttl~~~~~~~~~~~~~~~~~~~~ee~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERL 80 (165)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98999899998999999999998763997999986664489999999862246713079993599976999999999999
Q ss_pred H-HHCCCEEEEECCCCCCC
Q ss_conf 6-51487599865433321
Q gi|254780709|r 190 Q-AKKVDVLIIDTAGRLHN 207 (321)
Q Consensus 190 ~-~~~~DvvliDTAGR~~~ 207 (321)
T Consensus 81 ~~~~~~vliiiDSit~~~~ 99 (165)
T cd01120 81 RERGGDDLIILDELTRLVR 99 (165)
T ss_pred HHCCCCEEEEEECHHHHHH
T ss_conf 9869977999928899887