HHsearch alignment for GI: 254780709 and conserved domain: cd01123
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.55 E-value=0.045 Score=34.84 Aligned_cols=53 Identities=25% Similarity=0.324 Sum_probs=36.3
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHH------HCCCCEEEEECC-CCCHHHHHHHHHHHHHHC
Q ss_conf 41231135444442478999999985------226742677434-512456889999975303
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMS------DAGLKVMLAAGD-TFRSAAIDQLKIWADRTS 166 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~------~~g~kV~lva~D-tfR~aA~eQL~~~a~~~~ 166 (321)
T Consensus 19 G~itEi~G~~GsGKTql~lqla~~~~~~~~~~g~~~~vvyIdtE~~f~~---~Rl~qia~~~~ 78 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRP---ERLVQIAERFG 78 (235)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCH---HHHHHHHHHHC
T ss_conf 8799999999984999999999998424753678962999953677588---99999999713