HHsearch alignment for GI: 254780709 and conserved domain: cd01130
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.42 E-value=0.003 Score=43.09 Aligned_cols=78 Identities=24% Similarity=0.310 Sum_probs=43.4
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCC---CCCCCHHHHHHHHHHH
Q ss_conf 2311354444424789999999852267426774345124568899999753035321223---5866124542289999
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE---IGSDAAALAYEAFKQA 189 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~---~~~dp~~v~~~a~~~a 189 (321)
T Consensus 27 nIlIsG~tGSGKTTll~al~~~i~~~-~rivti-Ed~~El----~l~---~~~~v~l~~~~~~~~~~~~~~-~~~li~~a 96 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAFIPPD-ERIITI-EDTAEL----QLP---HPNWVRLVTRPGNVEGSGEVT-MADLLRSA 96 (186)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCC-CCEEEE-CCCHHH----CCC---CCCEEEEEEECCCCCCCCEEC-HHHHHHHH
T ss_conf 89998999998999999999613345-645984-153540----477---775688886046457865034-99998873
Q ss_pred HHHCCCEEEEE
Q ss_conf 65148759986
Q gi|254780709|r 190 QAKKVDVLIID 200 (321)
Q Consensus 190 ~~~~~DvvliD 200 (321)
T Consensus 97 LR~~pd~iivG 107 (186)
T cd01130 97 LRMRPDRIIVG 107 (186)
T ss_pred CCCCCCEEECC
T ss_conf 66899737317