HHsearch alignment for GI: 254780709 and conserved domain: cd01131
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.73 E-value=0.0001 Score=53.36 Aligned_cols=79 Identities=22% Similarity=0.379 Sum_probs=49.7
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 123113544444247899999998522-6742677434512456889999975303532122358661245422899996
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~~~~-g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~ 190 (321)
T Consensus 2 GliLitG~TGSGKTTtl~all~~i~~~~~~~IiTi-EDP-----iE~~--~~~~~-~~i~q~e~g~~~~sf-~~~lr~aL 71 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTI-EDP-----IEFV--HESKR-SLINQREVGLDTLSF-ENALKAAL 71 (198)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEE-CCC-----HHHH--CCCCC-EEEEECCCCCCCCCH-HHHHHHHH
T ss_conf 38999899999799999999985363788369996-473-----7752--36764-488733307886379-99999998
Q ss_pred HHCCCEEEEE
Q ss_conf 5148759986
Q gi|254780709|r 191 AKKVDVLIID 200 (321)
Q Consensus 191 ~~~~DvvliD 200 (321)
T Consensus 72 R~~PDvI~vG 81 (198)
T cd01131 72 RQDPDVILVG 81 (198)
T ss_pred HHCCCEEECC
T ss_conf 5488857527