HHsearch alignment for GI: 254780709 and conserved domain: cd01131

>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.73  E-value=0.0001  Score=53.36  Aligned_cols=79  Identities=22%  Similarity=0.379  Sum_probs=49.7

Q ss_pred             CEEECCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             123113544444247899999998522-6742677434512456889999975303532122358661245422899996
Q gi|254780709|r  112 HVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ  190 (321)
Q Consensus       112 ~vil~vG~nG~GKTTT~aKLA~~~~~~-g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~  190 (321)
T Consensus         2 GliLitG~TGSGKTTtl~all~~i~~~~~~~IiTi-EDP-----iE~~--~~~~~-~~i~q~e~g~~~~sf-~~~lr~aL   71 (198)
T cd01131           2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTI-EDP-----IEFV--HESKR-SLINQREVGLDTLSF-ENALKAAL   71 (198)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEE-CCC-----HHHH--CCCCC-EEEEECCCCCCCCCH-HHHHHHHH
T ss_conf             38999899999799999999985363788369996-473-----7752--36764-488733307886379-99999998


Q ss_pred             HHCCCEEEEE
Q ss_conf             5148759986
Q gi|254780709|r  191 AKKVDVLIID  200 (321)
Q Consensus       191 ~~~~DvvliD  200 (321)
T Consensus        72 R~~PDvI~vG   81 (198)
T cd01131          72 RQDPDVILVG   81 (198)
T ss_pred             HHCCCEEECC
T ss_conf             5488857527