HHsearch alignment for GI: 254780709 and conserved domain: cd01393
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.00 E-value=0.011 Score=39.22 Aligned_cols=92 Identities=20% Similarity=0.233 Sum_probs=52.7
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHCC------CCEEEEEC-CCCCHHHHHHHHHHH-H-----HHCCCCCCCCCCCCC
Q ss_conf 1231135444442478999999985226------74267743-451245688999997-5-----303532122358661
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKMSDAG------LKVMLAAG-DTFRSAAIDQLKIWA-D-----RTSADFVCSEIGSDA 178 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~~~~g------~kV~lva~-DtfR~aA~eQL~~~a-~-----~~~v~~~~~~~~~dp 178 (321)
T Consensus 20 ~ItEi~G~~gsGKT~l~lqla~~~q~~~~~~~~~g~vvyIDtE~~f~~~rl~~i~~~~~~~~~~~l~~i~~~~~~~~e~~ 99 (226)
T cd01393 20 RITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPYNGEQQ 99 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHEEEECCCCHHHH
T ss_conf 39999999999899999999999854221169996199995577531999999987603266776433368437999999
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 2454228999965148759986543
Q gi|254780709|r 179 AALAYEAFKQAQAKKVDVLIIDTAG 203 (321)
Q Consensus 179 ~~v~~~a~~~a~~~~~DvvliDTAG 203 (321)
T Consensus 100 ~~~~~~l~~~~~~~~v~liViDSi~ 124 (226)
T cd01393 100 LEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 9999999987524784289993220