HHsearch alignment for GI: 254780709 and conserved domain: cd01887
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=97.52 E-value=0.00095 Score=46.61 Aligned_cols=142 Identities=23% Similarity=0.278 Sum_probs=73.3
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 23113544444247899999998522674267743451245688999997530353212235866124542289999651
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~ 192 (321)
T Consensus 2 ~VaivG~~n~GKSTL~n~L----~--~~~~~~~~-----~~g~T~--------~i~~~~~~-----~~---------~~~ 48 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKI----R--KTNVAAGE-----AGGITQ--------HIGAFEVP-----AE---------VLK 48 (168)
T ss_pred EEEEEECCCCCHHHHHHHH----H--CCCCCEEE-----CCCCEE--------EECEEEEE-----EE---------ECC
T ss_conf 8999948998598999998----5--86750451-----698168--------71539999-----88---------258
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHH--HHHHHHHHHHHCCC-CEEEEECCCC-
Q ss_conf 4875998654333211577899998998763022234301123102335225--77899987643589-7699965457-
Q gi|254780709|r 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN--ALRQVEMFHAVAGT-TGLIMTKMDG- 268 (321)
Q Consensus 193 ~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~--~~~~a~~F~~~~~~-~g~I~TKlD~- 268 (321)
T Consensus 49 ~~~i~~iDTPG--h~~f---~~~~~--~~~~-----~aD~~ilvvda~~g~~~~~~~~~~~l~~-~~~p~ivviNKiD~~ 115 (168)
T cd01887 49 IPGITFIDTPG--HEAF---TNMRA--RGAS-----LTDIAILVVAADDGVMPQTIEAIKLAKA-ANVPFIVALNKIDKP 115 (168)
T ss_pred CCEEEEEECCC--CHHH---HHHHH--HHHH-----HCCEEEEEEECCCCCCHHHHHHHHHHHH-CCCCEEEEEECCCCC
T ss_conf 87189998998--1677---99999--9986-----2688999986466754589999999987-699789999893089
Q ss_pred CCCHHHHHHHHHHH----------CCCEEEEEC--CCCCCCCCC
Q ss_conf 87069999999997----------698899975--898132555
Q gi|254780709|r 269 TARGGGLIPIVVTH----------KIPVYFLGV--GEGINDLEP 300 (321)
Q Consensus 269 ta~~G~~ls~~~~~----------~~Pi~fig~--Ge~i~Dl~~ 300 (321)
T Consensus 116 ~~~~~~v~~~l~~~~~~~~~~~~~~~~iIpvSA~tG~gi~~L~~ 159 (168)
T cd01887 116 NANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLE 159 (168)
T ss_pred CCCHHHHHHHHHHHHCCCHHHCCCCCEEEEEECCCCCCHHHHHH
T ss_conf 87989999999997545245528987599998999989999999