HHsearch alignment for GI: 254780709 and conserved domain: cd02035

>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=98.73  E-value=3.1e-07  Score=71.11  Aligned_cols=144  Identities=19%  Similarity=0.255  Sum_probs=75.6

Q ss_pred             EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC---------HHHH------HH-HHHHHHHHCCCCC------
Q ss_conf             231135444442478999999985226742677434512---------4568------89-9999753035321------
Q gi|254780709|r  113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR---------SAAI------DQ-LKIWADRTSADFV------  170 (321)
Q Consensus       113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR---------~aA~------eQ-L~~~a~~~~v~~~------  170 (321)
T Consensus         1 i~~~sGKGGVGKTTvAaalA~~lA~~G~rvLlvs~DPah~l~d~~~~~L~~~~~~~~~e~~~~~~~~~v~~~~~~~~~~~   80 (217)
T cd02035           1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHNLSDKGLPNLSDAFIVEDPEIAPNLYREEVDATRRVERAWG   80 (217)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             98997899661999999999999968994999958987665323479865135888766679999875016665333110


Q ss_pred             ------CCCCCCCCH----HHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCE--EEEECC
Q ss_conf             ------223586612----45422899996514875998654333211577899998998763022234301--123102
Q gi|254780709|r  171 ------CSEIGSDAA----ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS--VLQVLD  238 (321)
Q Consensus       171 ------~~~~~~dp~----~v~~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~--~~lVld  238 (321)
T Consensus        81 ~~~~~~~~~~~~~pg~~E~~~l~~~~~~~~~~~yD~IVvDtpPTGhtlrlL~~~~------L~-----d~~~t~~~lVt~  149 (217)
T cd02035          81 GEGGLMLELAAALPGIEELASLLAVFREFSEGLYDVIVFDTAPTGHTLRLLVREL------LT-----DPERTSFRLVTL  149 (217)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHH------HC-----CCCCCEEEEEEC
T ss_conf             0114567776159978999999999999854899889982898556999867887------24-----888767999957


Q ss_pred             C--CCCHHHHHHHHHHHH-HCCCCEEEEECCC
Q ss_conf             3--352257789998764-3589769996545
Q gi|254780709|r  239 A--TTGQNALRQVEMFHA-VAGTTGLIMTKMD  267 (321)
Q Consensus       239 a--~~gq~~~~~a~~F~~-~~~~~g~I~TKlD  267 (321)
T Consensus       150 Pe~~~~~et~r~~~~L~~~gi~v~~vVvN~v~  181 (217)
T cd02035         150 PEKLPLYETERAITELALYGIPVDAVVVNRVL  181 (217)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf             76217999999999999779988989895882