HHsearch alignment for GI: 254780709 and conserved domain: cd03114
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.81 E-value=6.3e-08 Score=75.97 Aligned_cols=137 Identities=23% Similarity=0.276 Sum_probs=90.3
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC---CCCHHHHHHHHH----HHHHHCCCCCCCCC---CCCCHHHH
Q ss_conf 231135444442478999999985226742677434---512456889999----97530353212235---86612454
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD---TFRSAAIDQLKI----WADRTSADFVCSEI---GSDAAALA 182 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~D---tfR~aA~eQL~~----~a~~~~v~~~~~~~---~~dp~~v~ 182 (321)
T Consensus 1 viGitG~pGaGKStLi~~l~~~~~~~g~~VaVlavDPsS~~sgGalLGDRiRm~~~~~~~~vfiRs~atrg~~ggla~~~ 80 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILGDRIRMERHASDPGVFIRSLATRGFLGGLSRAT 80 (148)
T ss_pred CEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHH
T ss_conf 97625899787899999999999978983799996888786686203235453441579983686346666542046889
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC-CCEE
Q ss_conf 228999965148759986543332115778999989987630222343011231023352257789998764358-9769
Q gi|254780709|r 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG-TTGL 261 (321)
Q Consensus 183 ~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~~~~-~~g~ 261 (321)
T Consensus 81 ~~~i~~l~~~g~D~IiIETvGvGQse~~i~-------~--------~aD~~i~v~~p~~GD~i--Q~~K-~gi~e~aDl~ 142 (148)
T cd03114 81 PEVIRVLDAAGFDVIIVETVGVGQSEVDIA-------S--------MADTTVVVMAPGAGDDI--QAIK-AGIMEIADIV 142 (148)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHH-------H--------HCCEEEEEECCCCCCHH--HHCC-CCHHHCCCEE
T ss_conf 999999997599989997487775602655-------4--------35669999636887377--6112-2852124699
Q ss_pred EEECCC
Q ss_conf 996545
Q gi|254780709|r 262 IMTKMD 267 (321)
Q Consensus 262 I~TKlD 267 (321)
T Consensus 143 vvNK~D 148 (148)
T cd03114 143 VVNKAD 148 (148)
T ss_pred EEECCC
T ss_conf 993789