HHsearch alignment for GI: 254780709 and conserved domain: cd03114

>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.81  E-value=6.3e-08  Score=75.97  Aligned_cols=137  Identities=23%  Similarity=0.276  Sum_probs=90.3

Q ss_pred             EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC---CCCHHHHHHHHH----HHHHHCCCCCCCCC---CCCCHHHH
Q ss_conf             231135444442478999999985226742677434---512456889999----97530353212235---86612454
Q gi|254780709|r  113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD---TFRSAAIDQLKI----WADRTSADFVCSEI---GSDAAALA  182 (321)
Q Consensus       113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~D---tfR~aA~eQL~~----~a~~~~v~~~~~~~---~~dp~~v~  182 (321)
T Consensus         1 viGitG~pGaGKStLi~~l~~~~~~~g~~VaVlavDPsS~~sgGalLGDRiRm~~~~~~~~vfiRs~atrg~~ggla~~~   80 (148)
T cd03114           1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILGDRIRMERHASDPGVFIRSLATRGFLGGLSRAT   80 (148)
T ss_pred             CEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHH
T ss_conf             97625899787899999999999978983799996888786686203235453441579983686346666542046889


Q ss_pred             HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC-CCEE
Q ss_conf             228999965148759986543332115778999989987630222343011231023352257789998764358-9769
Q gi|254780709|r  183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG-TTGL  261 (321)
Q Consensus       183 ~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~~~~-~~g~  261 (321)
T Consensus        81 ~~~i~~l~~~g~D~IiIETvGvGQse~~i~-------~--------~aD~~i~v~~p~~GD~i--Q~~K-~gi~e~aDl~  142 (148)
T cd03114          81 PEVIRVLDAAGFDVIIVETVGVGQSEVDIA-------S--------MADTTVVVMAPGAGDDI--QAIK-AGIMEIADIV  142 (148)
T ss_pred             HHHHHHHHHCCCCEEEEECCCCCCCHHHHH-------H--------HCCEEEEEECCCCCCHH--HHCC-CCHHHCCCEE
T ss_conf             999999997599989997487775602655-------4--------35669999636887377--6112-2852124699


Q ss_pred             EEECCC
Q ss_conf             996545
Q gi|254780709|r  262 IMTKMD  267 (321)
Q Consensus       262 I~TKlD  267 (321)
T Consensus       143 vvNK~D  148 (148)
T cd03114         143 VVNKAD  148 (148)
T ss_pred             EEECCC
T ss_conf             993789