HHsearch alignment for GI: 254780709 and conserved domain: cd03216
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.08 E-value=0.0029 Score=43.22 Aligned_cols=102 Identities=25% Similarity=0.289 Sum_probs=56.1
Q ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 74123113544444247899999998522674267743451245688999997530353212235866124542289999
Q gi|254780709|r 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 (321)
Q Consensus 110 ~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a 189 (321)
T Consensus 25 ~Gei~~lvG~nGaGKSTl~~~i~Gl~~p~~G~i~i~G~~i~~~~~~~-----~~~~gi~~v~qLSgG~~Qr---v~iara 96 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRD-----ARRAGIAMVYQLSVGERQM---VEIARA 96 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH-----HHHCCCCEECCCCHHHHHH---HHHHHH
T ss_conf 99899999889989999999995776898578999999999999999-----9987994894699899999---999999
Q ss_pred HHHCCCEEEEE--CCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 65148759986--5433321157789999899876
Q gi|254780709|r 190 QAKKVDVLIID--TAGRLHNNSILMAGIGKMIRVL 222 (321)
Q Consensus 190 ~~~~~DvvliD--TAGR~~~~~~lm~EL~ki~~v~ 222 (321)
T Consensus 97 l~~~p~llilDEPt~gL---D~~~~~~i~~~l~~l 128 (163)
T cd03216 97 LARNARLLILDEPTAAL---TPAEVERLFKVIRRL 128 (163)
T ss_pred HHHCCCEEEEECCCCCC---CHHHHHHHHHHHHHH
T ss_conf 97299999990975579---999999999999999