HHsearch alignment for GI: 254780709 and conserved domain: cd03222
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.17 E-value=0.0076 Score=40.28 Aligned_cols=92 Identities=23% Similarity=0.241 Sum_probs=48.6
Q ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 74123113544444247899999998522674267743451245688999997530353212235866124542289999
Q gi|254780709|r 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 (321)
Q Consensus 110 ~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a 189 (321)
T Consensus 24 ~GEiv~ilGpNGaGKSTllk~i~G~l~p~~G~i~~---~g~~~~~~pq~--------~~L----SGGqr---QRv~iAra 85 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEW---DGITPVYKPQY--------IDL----SGGEL---QRVAIAAA 85 (177)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEE---CCCCEECCCCC--------CCC----CHHHH---HHHHHHHH
T ss_conf 99899998999999999999996886788994666---68612215551--------507----98999---99999999
Q ss_pred HHHCCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 6514875998654333211577899998998
Q gi|254780709|r 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220 (321)
Q Consensus 190 ~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~ 220 (321)
T Consensus 86 l~~~p~lllLDEPt-s~LD~~~r~~i~~~ik 115 (177)
T cd03222 86 LLRNATFYLFDEPS-AYLDIEQRLNAARAIR 115 (177)
T ss_pred HHCCCCEEEECCCC-CCCCHHHHHHHHHHHH
T ss_conf 82399999974886-5389999999999999