HHsearch alignment for GI: 254780709 and conserved domain: cd03240
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=95.71 E-value=0.0074 Score=40.36 Aligned_cols=33 Identities=36% Similarity=0.554 Sum_probs=22.0
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 21000136674123113544444247899999998
Q gi|254780709|r 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135 (321)
Q Consensus 101 ~~~~~~~~~~p~vil~vG~nG~GKTTT~aKLA~~~ 135 (321)
T Consensus 14 ~~~~i~f~~~--itaivG~NGaGKSTLl~~i~~~l 46 (204)
T cd03240 14 ERSEIEFFSP--LTLIVGQNGAGKTTIIEALKYAL 46 (204)
T ss_pred CCCEEEEECC--EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 7735885088--89999899999999999986304