HHsearch alignment for GI: 254780709 and conserved domain: cd03301
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=95.52 E-value=0.082 Score=33.03 Aligned_cols=35 Identities=17% Similarity=0.369 Sum_probs=25.8
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 41231135444442478999999985226742677
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lv 145 (321)
T Consensus 26 Ge~~~i~GpSG~GKSTlLr~iaGl~~p~~G~I~~~ 60 (213)
T cd03301 26 GEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIG 60 (213)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEEC
T ss_conf 98999999998809999999976999986399999