HHsearch alignment for GI: 254780709 and conserved domain: cd04150
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=96.74 E-value=0.0035 Score=42.67 Aligned_cols=134 Identities=19% Similarity=0.251 Sum_probs=68.9
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 23113544444247899999998522674267743451245688999997530353212235866124542289999651
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~ 192 (321)
T Consensus 2 KililG~~~sGKTsll~~l~-----~~~~~----------------------~~~pT~g~----~~~~--------~~~~ 42 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLK-----LGEIV----------------------TTIPTIGF----NVET--------VEYK 42 (159)
T ss_pred EEEEECCCCCCHHHHHHHHH-----CCCCC----------------------CCCCCCCC----CEEE--------EEEC
T ss_conf 99999999999899999997-----29967----------------------75896870----1799--------9989
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC---CC----EEEEEC
Q ss_conf 48759986543332115778999989987630222343011231023352257789998764358---97----699965
Q gi|254780709|r 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG---TT----GLIMTK 265 (321)
Q Consensus 193 ~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~~~~---~~----g~I~TK 265 (321)
T Consensus 43 ~~~l~iwD~~G~~~~r-----------~l~~~Y~~-~a~~iI~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~pili~~NK 110 (159)
T cd04150 43 NISFTVWDVGGQDKIR-----------PLWRHYFQ-NTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANK 110 (159)
T ss_pred CEEEEEEECCCCCCCC-----------HHHHHHCC-CCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEEC
T ss_conf 8999999789972146-----------56786476-87389999977777899999999999962353369829999975
Q ss_pred CCC-CCCHH----HHHHHHHHHCCCEEEEE----CCCCCCC
Q ss_conf 457-87069----99999999769889997----5898132
Q gi|254780709|r 266 MDG-TARGG----GLIPIVVTHKIPVYFLG----VGEGIND 297 (321)
Q Consensus 266 lD~-ta~~G----~~ls~~~~~~~Pi~fig----~Ge~i~D 297 (321)
T Consensus 111 ~Dl~~~~~~~ei~~~l~l~~~~~~~~~i~~~SA~tG~Gv~e 151 (159)
T cd04150 111 QDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYE 151 (159)
T ss_pred CCCCCCCCHHHHHHHHCHHHHHCCCEEEEEEECCCCCCHHH
T ss_conf 66778989999999968666637985999826867939899