HHsearch alignment for GI: 254780709 and conserved domain: cd04159
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=95.84 E-value=0.012 Score=38.93 Aligned_cols=134 Identities=16% Similarity=0.168 Sum_probs=65.4
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 31135444442478999999985226742677434512456889999975303532122358661245422899996514
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~~ 193 (321)
T Consensus 2 I~llG~~~~GKTsll~~~~~----~~f~~-----~------------~~pTig~~~~~---------i--------~~~~ 43 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAG----GQFSE-----D------------TIPTVGFNMRK---------V--------TKGN 43 (159)
T ss_pred EEEECCCCCCHHHHHHHHHC----CCCCC-----C------------CCCCCCEEEEE---------E--------EECC
T ss_conf 89999999869999999975----99988-----6------------16732505899---------9--------9899
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHH-HHHHHC---CCC----EEEEEC
Q ss_conf 875998654333211577899998998763022234301123102335225778999-876435---897----699965
Q gi|254780709|r 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE-MFHAVA---GTT----GLIMTK 265 (321)
Q Consensus 194 ~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~-~F~~~~---~~~----g~I~TK 265 (321)
T Consensus 44 ~~l~iwDt~G~e-----~~~~l~------~~y~~-~~~~ii~V~D~sd~-~s~~~~~~~l~~~~~~~~~~~~piliv~NK 110 (159)
T cd04159 44 VTLKVWDLGGQP-----RFRSMW------ERYCR-GVNAIVYVVDAADR-TALEAAKNELHDLLEKPSLEGIPLLVLGNK 110 (159)
T ss_pred EEEEEEECCCHH-----HHHHHH------HHHHC-CCCEEEECCCCCCH-HHHHHHHHHHHHHHHHHCCCCCEEEEEEEC
T ss_conf 999999798358-----779999------98746-86368751577878-899999999999985443489828988835
Q ss_pred CCCCCCH-----HHHHHHHHHHCCCEEEE--E--CCCCCCCC
Q ss_conf 4578706-----99999999976988999--7--58981325
Q gi|254780709|r 266 MDGTARG-----GGLIPIVVTHKIPVYFL--G--VGEGINDL 298 (321)
Q Consensus 266 lD~ta~~-----G~~ls~~~~~~~Pi~fi--g--~Ge~i~Dl 298 (321)
T Consensus 111 ~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gI~e~ 152 (159)
T cd04159 111 NDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIV 152 (159)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH
T ss_conf 676434789999999999987349987999979689698999