HHsearch alignment for GI: 254780709 and conserved domain: cd04161

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=95.97  E-value=0.038  Score=35.36  Aligned_cols=110  Identities=19%  Similarity=0.248  Sum_probs=58.0

Q ss_pred             EECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf             31135444442478999999985226742677434512456889999975303532122358661245422899996514
Q gi|254780709|r  114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK  193 (321)
Q Consensus       114 il~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~~  193 (321)
T Consensus         2 ililGLd~aGKTTil~~l~----~-~~~~~----------------------~~PT~G~~------------~~~~~~~~   42 (167)
T cd04161           2 LLTVGLDNAGKTTLVSALQ----G-EIPKK----------------------VAPTVGFT------------PTKLRLDK   42 (167)
T ss_pred             EEEEEECCCCHHHHHHHHC----C-CCCCC----------------------CCCCCCCC------------EEEEEECC
T ss_conf             8999008998899999982----8-99876----------------------50877731------------79999899


Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH
Q ss_conf             87599865433321157789999899876302223430112310233522577899987643589769996545787069
Q gi|254780709|r  194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG  273 (321)
Q Consensus       194 ~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~~~~~~g~I~TKlD~ta~~G  273 (321)
T Consensus        43 ~~l~~~DlgG~~~~-----------R~lW~~Y~~-~~~gIIfVVDssD~~rl~eak~~L~~lL~----------------   94 (167)
T cd04161          43 YEVCIFDLGGGANF-----------RGIWVNYYA-EAHGLVFVVDSSDDDRVQEVKEILRELLQ----------------   94 (167)
T ss_pred             EEEEEEECCCCHHH-----------HHHHHHHCC-CCCEEEEEEECCCHHHHHHHHHHHHHHHC----------------
T ss_conf             99999989987788-----------899998734-77657999855758899999999999965----------------


Q ss_pred             HHHHHHHHHCCCEEEEECCCC
Q ss_conf             999999997698899975898
Q gi|254780709|r  274 GLIPIVVTHKIPVYFLGVGEG  294 (321)
Q Consensus       274 ~~ls~~~~~~~Pi~fig~Ge~  294 (321)
T Consensus        95 ----~~~l~~~PiLIlaNKqD  111 (167)
T cd04161          95 ----HPRVSGKPILVLANKQD  111 (167)
T ss_pred             ----CHHHCCCEEEEEEECCC
T ss_conf             ----88778995999988657