HHsearch alignment for GI: 254780709 and conserved domain: cd04161
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=95.97 E-value=0.038 Score=35.36 Aligned_cols=110 Identities=19% Similarity=0.248 Sum_probs=58.0
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 31135444442478999999985226742677434512456889999975303532122358661245422899996514
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~~ 193 (321)
T Consensus 2 ililGLd~aGKTTil~~l~----~-~~~~~----------------------~~PT~G~~------------~~~~~~~~ 42 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQ----G-EIPKK----------------------VAPTVGFT------------PTKLRLDK 42 (167)
T ss_pred EEEEEECCCCHHHHHHHHC----C-CCCCC----------------------CCCCCCCC------------EEEEEECC
T ss_conf 8999008998899999982----8-99876----------------------50877731------------79999899
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH
Q ss_conf 87599865433321157789999899876302223430112310233522577899987643589769996545787069
Q gi|254780709|r 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273 (321)
Q Consensus 194 ~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~~~~~~g~I~TKlD~ta~~G 273 (321)
T Consensus 43 ~~l~~~DlgG~~~~-----------R~lW~~Y~~-~~~gIIfVVDssD~~rl~eak~~L~~lL~---------------- 94 (167)
T cd04161 43 YEVCIFDLGGGANF-----------RGIWVNYYA-EAHGLVFVVDSSDDDRVQEVKEILRELLQ---------------- 94 (167)
T ss_pred EEEEEEECCCCHHH-----------HHHHHHHCC-CCCEEEEEEECCCHHHHHHHHHHHHHHHC----------------
T ss_conf 99999989987788-----------899998734-77657999855758899999999999965----------------
Q ss_pred HHHHHHHHHCCCEEEEECCCC
Q ss_conf 999999997698899975898
Q gi|254780709|r 274 GLIPIVVTHKIPVYFLGVGEG 294 (321)
Q Consensus 274 ~~ls~~~~~~~Pi~fig~Ge~ 294 (321)
T Consensus 95 ----~~~l~~~PiLIlaNKqD 111 (167)
T cd04161 95 ----HPRVSGKPILVLANKQD 111 (167)
T ss_pred ----CHHHCCCEEEEEEECCC
T ss_conf ----88778995999988657