HHsearch alignment for GI: 254780709 and conserved domain: cd04162
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=96.46 E-value=0.022 Score=37.05 Aligned_cols=126 Identities=17% Similarity=0.282 Sum_probs=67.1
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCE-EEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 31135444442478999999985226742-67743451245688999997530353212235866124542289999651
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKV-MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA~~~~~~g~kV-~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~ 192 (321)
T Consensus 2 IlilGLd~aGKTTil~~l~~-----~~~~~~~----------------------~PT~Gf----~~~~i--------~~~ 42 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSS-----ERSLESV----------------------VPTTGF----NSVAI--------PTQ 42 (164)
T ss_pred EEEECCCCCCHHHHHHHHHC-----CCCCCCC----------------------CCCCCC----CEEEE--------EEC
T ss_conf 99996799989999999816-----9987653----------------------563277----46999--------989
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHH-HHHHHHCCCCEEEEECCCCCCC
Q ss_conf 487599865433321157789999899876302223430112310233522577899-9876435897699965457870
Q gi|254780709|r 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV-EMFHAVAGTTGLIMTKMDGTAR 271 (321)
Q Consensus 193 ~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a-~~F~~~~~~~g~I~TKlD~ta~ 271 (321)
T Consensus 43 ~~~l~~wDlgGq~-----------~~R~~W~~Y~~-~~~gIIfVVDssD~-~rl~eak~~L~~ll~----------~--- 96 (164)
T cd04162 43 DAIMELLEIGGSQ-----------NLRKYWKRYLS-GSQGLIFVVDSADS-ERLPLARQELHQLLQ----------H--- 96 (164)
T ss_pred CEEEEEEECCCHH-----------HHHHHHHHHHH-CCCEEEEEEECCCH-HHHHHHHHHHHHHHH----------C---
T ss_conf 9999998537528-----------88656998711-77589999956888-899999999999970----------8---
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCCC-CCCHHHHHHHHCCCCCCC
Q ss_conf 6999999999769889997589813255-577899999872865646
Q gi|254780709|r 272 GGGLIPIVVTHKIPVYFLGVGEGINDLE-PFVAKDFSAVITGCLDYG 317 (321)
Q Consensus 272 ~G~~ls~~~~~~~Pi~fig~Ge~i~Dl~-~f~~~~~~~~llG~gd~~ 317 (321)
T Consensus 97 ---------~~~~PlLIlaNKq---Dl~~a~s~~ei-~~~L~L~~i~ 130 (164)
T cd04162 97 ---------PPDLPLVVLANKQ---DLPAARSVQEI-HKELELEPIA 130 (164)
T ss_pred ---------CCCCEEEEEEECC---CCCCCCCHHHH-HHHCCCCCCC
T ss_conf ---------7998699998632---43369999999-9866994637