HHsearch alignment for GI: 254780709 and conserved domain: cd04167

>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=95.86  E-value=0.083  Score=33.00  Aligned_cols=124  Identities=22%  Similarity=0.267  Sum_probs=69.4

Q ss_pred             EEECCCCCCCCHHHHHHHHHHHHH---HCCCC--EEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             231135444442478999999985---22674--2677434512456889999975303532122358661245422899
Q gi|254780709|r  113 VILVVGVNGVGKTTVIGKLSKKMS---DAGLK--VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK  187 (321)
Q Consensus       113 vil~vG~nG~GKTTT~aKLA~~~~---~~g~k--V~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~  187 (321)
T Consensus         2 NvaiigHvdhGKTTL~d~Ll~~t~~~~~~~~~~~~~~~~~D~~---~~E~eRgiTI~s~-----------~~sl~~~~--   65 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIR---KDEQERGISIKSS-----------PISLVLPD--   65 (213)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCC---HHHHHHCCCEECC-----------EEEEEEEC--
T ss_conf             5999827898989999999997344555404442113575164---6654203558614-----------59999825--


Q ss_pred             HHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCH-----HHHHHHHHHHHHCCCCEEE
Q ss_conf             99651487599865433321157789999899876302223430112310233522-----5778999876435897699
Q gi|254780709|r  188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ-----NALRQVEMFHAVAGTTGLI  262 (321)
Q Consensus       188 ~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq-----~~~~~a~~F~~~~~~~g~I  262 (321)
T Consensus        66 -~~~k~~~inlIDTPGH----~dF~~ev~~al~~--------~DgailVVDa~eGv~~qT~~~l~~a~~--~~l~-~ilv  129 (213)
T cd04167          66 -SKGKSYLFNIIDTPGH----VNFMDEVAAALRL--------SDGVVLVVDVVEGVTSNTERLIRHAIL--EGLP-IVLV  129 (213)
T ss_pred             -CCCCEEEEEEEECCCC----HHHHHHHHHHHHH--------CCEEEEEEECCCCCCHHHHHHHHHHHH--CCCC-EEEE
T ss_conf             -6675057877889872----4179999988863--------776799998788875779999999998--6999-8999


Q ss_pred             EECCCC
Q ss_conf             965457
Q gi|254780709|r  263 MTKMDG  268 (321)
Q Consensus       263 ~TKlD~  268 (321)
T Consensus       130 iNKiDR  135 (213)
T cd04167         130 INKIDR  135 (213)
T ss_pred             EECCCC
T ss_conf             988234