HHsearch alignment for GI: 254780709 and conserved domain: cd04167
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=95.86 E-value=0.083 Score=33.00 Aligned_cols=124 Identities=22% Similarity=0.267 Sum_probs=69.4
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHH---HCCCC--EEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 231135444442478999999985---22674--2677434512456889999975303532122358661245422899
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMS---DAGLK--VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~---~~g~k--V~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~ 187 (321)
T Consensus 2 NvaiigHvdhGKTTL~d~Ll~~t~~~~~~~~~~~~~~~~~D~~---~~E~eRgiTI~s~-----------~~sl~~~~-- 65 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIR---KDEQERGISIKSS-----------PISLVLPD-- 65 (213)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCC---HHHHHHCCCEECC-----------EEEEEEEC--
T ss_conf 5999827898989999999997344555404442113575164---6654203558614-----------59999825--
Q ss_pred HHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCH-----HHHHHHHHHHHHCCCCEEE
Q ss_conf 99651487599865433321157789999899876302223430112310233522-----5778999876435897699
Q gi|254780709|r 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ-----NALRQVEMFHAVAGTTGLI 262 (321)
Q Consensus 188 ~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq-----~~~~~a~~F~~~~~~~g~I 262 (321)
T Consensus 66 -~~~k~~~inlIDTPGH----~dF~~ev~~al~~--------~DgailVVDa~eGv~~qT~~~l~~a~~--~~l~-~ilv 129 (213)
T cd04167 66 -SKGKSYLFNIIDTPGH----VNFMDEVAAALRL--------SDGVVLVVDVVEGVTSNTERLIRHAIL--EGLP-IVLV 129 (213)
T ss_pred -CCCCEEEEEEEECCCC----HHHHHHHHHHHHH--------CCEEEEEEECCCCCCHHHHHHHHHHHH--CCCC-EEEE
T ss_conf -6675057877889872----4179999988863--------776799998788875779999999998--6999-8999
Q ss_pred EECCCC
Q ss_conf 965457
Q gi|254780709|r 263 MTKMDG 268 (321)
Q Consensus 263 ~TKlD~ 268 (321)
T Consensus 130 iNKiDR 135 (213)
T cd04167 130 INKIDR 135 (213)
T ss_pred EECCCC
T ss_conf 988234