HHsearch alignment for GI: 254780709 and conserved domain: pfam00448
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=100.00 E-value=0 Score=455.49 Aligned_cols=196 Identities=49% Similarity=0.780 Sum_probs=192.3
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 41231135444442478999999985226742677434512456889999975303532122358661245422899996
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~ 190 (321)
T Consensus 1 P~vi~lvGptGvGKTTTiaKLAa~~~~~~~~V~lit~Dt~R~gA~eQL~~ya~~l~v~~~~~~~~~d~~~~~~~~l~~~~ 80 (196)
T pfam00448 1 PNVILLVGLQGSGKTTTIAKLAAYLKKQGKKVLLVAADTFRAAAIEQLKQLAERLGVPVFGSGTGSDPAAVAFDAVEKAK 80 (196)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 96999989999988999999999999779928999758776889999999998639817814877787899999999988
Q ss_pred HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 51487599865433321157789999899876302223430112310233522577899987643589769996545787
Q gi|254780709|r 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 (321)
Q Consensus 191 ~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~~~~~~g~I~TKlD~ta 270 (321)
T Consensus 81 ~~~~D~IlIDTaGr~~~d~~~~~el~~~~~~~~------~~~~~LVl~a~~~~~~~~~~~~f~~~~~~~~~I~TKlDet~ 154 (196)
T pfam00448 81 AENYDVVLVDTAGRLQNDKNLMDELKKIKRVIA------PDEVLLVLDATTGQNALNQAKAFNEAVGITGVILTKLDGDA 154 (196)
T ss_pred HCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCC------CCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 468999999899987476778999999985228------73028998567782137899987600477626888405788
Q ss_pred CHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 069999999997698899975898132555778999998728
Q gi|254780709|r 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 (321)
Q Consensus 271 ~~G~~ls~~~~~~~Pi~fig~Ge~i~Dl~~f~~~~~~~~llG 312 (321)
T Consensus 155 ~~G~~l~~~~~~~~Pi~~~t~Gq~v~Dl~~~~~~~~~~~lLG 196 (196)
T pfam00448 155 KGGAALSIAAETGKPIKFIGVGEKIDDLEPFDPERFVSRLLG 196 (196)
T ss_pred CCCHHHHHHHHHCCCEEEEECCCCHHHCCCCCHHHHHHHHCC
T ss_conf 752999899998969799967998120634799999998559