HHsearch alignment for GI: 254780709 and conserved domain: pfam00448

>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=100.00  E-value=0  Score=455.49  Aligned_cols=196  Identities=49%  Similarity=0.780  Sum_probs=192.3

Q ss_pred             CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             41231135444442478999999985226742677434512456889999975303532122358661245422899996
Q gi|254780709|r  111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ  190 (321)
Q Consensus       111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~  190 (321)
T Consensus         1 P~vi~lvGptGvGKTTTiaKLAa~~~~~~~~V~lit~Dt~R~gA~eQL~~ya~~l~v~~~~~~~~~d~~~~~~~~l~~~~   80 (196)
T pfam00448         1 PNVILLVGLQGSGKTTTIAKLAAYLKKQGKKVLLVAADTFRAAAIEQLKQLAERLGVPVFGSGTGSDPAAVAFDAVEKAK   80 (196)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             96999989999988999999999999779928999758776889999999998639817814877787899999999988


Q ss_pred             HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf             51487599865433321157789999899876302223430112310233522577899987643589769996545787
Q gi|254780709|r  191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA  270 (321)
Q Consensus       191 ~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~~~~~~g~I~TKlD~ta  270 (321)
T Consensus        81 ~~~~D~IlIDTaGr~~~d~~~~~el~~~~~~~~------~~~~~LVl~a~~~~~~~~~~~~f~~~~~~~~~I~TKlDet~  154 (196)
T pfam00448        81 AENYDVVLVDTAGRLQNDKNLMDELKKIKRVIA------PDEVLLVLDATTGQNALNQAKAFNEAVGITGVILTKLDGDA  154 (196)
T ss_pred             HCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCC------CCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf             468999999899987476778999999985228------73028998567782137899987600477626888405788


Q ss_pred             CHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHCC
Q ss_conf             069999999997698899975898132555778999998728
Q gi|254780709|r  271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG  312 (321)
Q Consensus       271 ~~G~~ls~~~~~~~Pi~fig~Ge~i~Dl~~f~~~~~~~~llG  312 (321)
T Consensus       155 ~~G~~l~~~~~~~~Pi~~~t~Gq~v~Dl~~~~~~~~~~~lLG  196 (196)
T pfam00448       155 KGGAALSIAAETGKPIKFIGVGEKIDDLEPFDPERFVSRLLG  196 (196)
T ss_pred             CCCHHHHHHHHHCCCEEEEECCCCHHHCCCCCHHHHHHHHCC
T ss_conf             752999899998969799967998120634799999998559