HHsearch alignment for GI: 254780709 and conserved domain: pfam02606
>pfam02606 LpxK Tetraacyldisaccharide-1-P 4'-kinase. This family consists of tetraacyldisaccharide-1-P 4'-kinase also known as Lipid-A 4'-kinase or Lipid A biosynthesis protein LpxK, EC:2.7.1.130. This enzyme catalyses the reaction: ATP + 2,3-bis(3-hydroxytetradecanoyl)-D -glucosaminyl-(beta-D-1,6)-2,3-bis(3-hydroxytetradecanoyl)-D-glu cosam inyl beta-phosphate <= ADP + 2,3,2',3'-tetrakis(3-hydroxytetradecanoyl)-D- glucosaminyl-1,6-beta-D-glucosamine 1,4'-bisphosphate. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS). The family contains a P-loop motif at the N terminus.
Probab=97.18 E-value=0.0034 Score=42.74 Aligned_cols=78 Identities=24% Similarity=0.296 Sum_probs=51.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC---------------CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf 35444442478999999985226742677434---------------512456889999975303532122358661245
Q gi|254780709|r 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD---------------TFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181 (321)
Q Consensus 117 vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~D---------------tfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v 181 (321)
T Consensus 43 it~GGtGKTP~v~~l~~~l~~~g~~~~ilSRGYg~~~~~~~~v~~~~~~~~~GDEp~l-la~~~~~~v~V~~~R------ 115 (318)
T pfam02606 43 ITVGGTGKTPLVIALAELLRARGLRPGVLSRGYGGKSKGPVLVDPGSSAAEVGDEPLL-LARRTPVPVVVGPDR------ 115 (318)
T ss_pred EEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEECCCCCHHHCCCHHHH-HHHHCCCCEEECCCH------
T ss_conf 8458878589999999999976994478326767657887897168894673969999-987569859980528------
Q ss_pred HHHHHHHHH-HHCCCEEEEECC
Q ss_conf 422899996-514875998654
Q gi|254780709|r 182 AYEAFKQAQ-AKKVDVLIIDTA 202 (321)
Q Consensus 182 ~~~a~~~a~-~~~~DvvliDTA 202 (321)
T Consensus 116 -~~a~~~l~~~~~~dviIlDDG 136 (318)
T pfam02606 116 -AAAARALLEAHGADVIILDDG 136 (318)
T ss_pred -HHHHHHHHHHCCCCEEEECCC
T ss_conf -999999998489979991486