HHsearch alignment for GI: 254780709 and conserved domain: pfam02881
>pfam02881 SRP54_N SRP54-type protein, helical bundle domain.
Probab=98.78 E-value=5.4e-08 Score=76.43 Aligned_cols=76 Identities=30% Similarity=0.413 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHH
Q ss_conf 99999999999999999860567789999999999999738898999999999998751278998-99999999987
Q gi|254780709|r 17 LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-QRVLYDVSELI 92 (321)
Q Consensus 17 Lk~gL~kt~~~L~~~l~~l~~~~~lde~~leeLee~LL~ADVg~~va~~Iie~ik~~~~~~~i~~-~~i~~~l~~~L 92 (321)
T Consensus 1 l~~~l~kt~~~l~~~~~~~~~~~~~i~~~l~ele~~Li~aDvg~~~~~~ii~~l~~~~~~~~~~~~~~i~~~l~e~L 77 (77)
T pfam02881 1 LKEGLSKTRSKLGGKIKDLFLGEKKIDELLEELEEALLEADVGVETTEKIIERLKELVGRKGLSDPEEIKKALKEEL 77 (77)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC
T ss_conf 91268898999999999998489860899999999999812468999999999999998717999999999999769