HHsearch alignment for GI: 254780709 and conserved domain: pfam02881

>pfam02881 SRP54_N SRP54-type protein, helical bundle domain.
Probab=98.78  E-value=5.4e-08  Score=76.43  Aligned_cols=76  Identities=30%  Similarity=0.413  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHH
Q ss_conf             99999999999999999860567789999999999999738898999999999998751278998-99999999987
Q gi|254780709|r   17 LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-QRVLYDVSELI   92 (321)
Q Consensus        17 Lk~gL~kt~~~L~~~l~~l~~~~~lde~~leeLee~LL~ADVg~~va~~Iie~ik~~~~~~~i~~-~~i~~~l~~~L   92 (321)
T Consensus         1 l~~~l~kt~~~l~~~~~~~~~~~~~i~~~l~ele~~Li~aDvg~~~~~~ii~~l~~~~~~~~~~~~~~i~~~l~e~L   77 (77)
T pfam02881         1 LKEGLSKTRSKLGGKIKDLFLGEKKIDELLEELEEALLEADVGVETTEKIIERLKELVGRKGLSDPEEIKKALKEEL   77 (77)
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC
T ss_conf             91268898999999999998489860899999999999812468999999999999998717999999999999769