HHsearch alignment for GI: 254780709 and conserved domain: pfam04851
>pfam04851 ResIII Type III restriction enzyme, res subunit.
Probab=96.77 E-value=0.0047 Score=41.76 Aligned_cols=59 Identities=31% Similarity=0.329 Sum_probs=42.9
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 31135444442478999999985226742677434512456889999975303532122358661245422899996514
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~~ 193 (321)
T Consensus 21 ~~i~~pTGsGKT~~~~~~i~~~~~~~~~~lvlv---p~~---~L~~Q~~~~~---------------------------- 66 (103)
T pfam04851 21 GLIVMATGSGKTLTAAKLIARLLKGKKKVLFLV---PRK---DLLEQALEEF---------------------------- 66 (103)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEE---CCH---HHHHHHHHHH----------------------------
T ss_conf 699958999879999999999984699299990---829---9999999965----------------------------
Q ss_pred CCEEEEECCCCCCCH
Q ss_conf 875998654333211
Q gi|254780709|r 194 VDVLIIDTAGRLHNN 208 (321)
Q Consensus 194 ~DvvliDTAGR~~~~ 208 (321)
T Consensus 67 --lii~DE~H~~~a~ 79 (103)
T pfam04851 67 --VIIIDEAHHSSAK 79 (103)
T ss_pred --HHHHHHHHHCCCH
T ss_conf --6460163523537