HHsearch alignment for GI: 254780709 and conserved domain: pfam07015
>pfam07015 VirC1 VirC1 protein. This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon which enhances T-DNA processing probably does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA.
Probab=98.73 E-value=6.6e-08 Score=75.79 Aligned_cols=159 Identities=19% Similarity=0.257 Sum_probs=89.7
Q ss_pred EEECC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH---HHCC--CCCCCCCCCCCHHHHHHHH
Q ss_conf 23113-5444442478999999985226742677434512456889999975---3035--3212235866124542289
Q gi|254780709|r 113 VILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD---RTSA--DFVCSEIGSDAAALAYEAF 186 (321)
Q Consensus 113 vil~v-G~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~---~~~v--~~~~~~~~~dp~~v~~~a~ 186 (321)
T Consensus 3 vi~~~~~KGG~GKtT~a~~la~~~~~~g~~V~liD~Dpq~s-----~~~W~~~a~~~~~~~~~~-~v~~~~~~~~l~~~~ 76 (231)
T pfam07015 3 LITFCSFKGGAGKTTALMGLCSALASDGKRVALFEADENRP-----LTKWRENALRKGTWDPAC-EIFNADELPLLEQAY 76 (231)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCC-----HHHHHHHHHHCCCCCCCC-CEECCCCHHHHHHHH
T ss_conf 79996179986599999999999996899599996899868-----899999876468888765-222056601589999
Q ss_pred HHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCC-CCCHHH------HH----HHHHHHHH
Q ss_conf 99965148759986543332115778999989987630222343011231023-352257------78----99987643
Q gi|254780709|r 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA-TTGQNA------LR----QVEMFHAV 255 (321)
Q Consensus 187 ~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda-~~gq~~------~~----~a~~F~~~ 255 (321)
T Consensus 77 ~~~~~~~yD~VIIDtpg~~s~---~~~~------AI~~-----ADlVL--IP~qpSplD~~~a~~t~~~i~~~~~~~~~~ 140 (231)
T pfam07015 77 EHAEGSGFDYALADTHGGSSE---LNNT------IIAS-----SDLLL--IPTMLTPLDIDEALATYRYVIELLLTENLA 140 (231)
T ss_pred HHHHHCCCCEEEECCCCCCCH---HHHH------HHHH-----CCEEE--ECCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 988657999899839985758---9999------9997-----89899--778998233999999999999999973789
Q ss_pred CCCCEEEEECCCCCCCHH--HHHHHHHHHCCCEEEEECCCCC
Q ss_conf 589769996545787069--9999999976988999758981
Q gi|254780709|r 256 AGTTGLIMTKMDGTARGG--GLIPIVVTHKIPVYFLGVGEGI 295 (321)
Q Consensus 256 ~~~~g~I~TKlD~ta~~G--~~ls~~~~~~~Pi~fig~Ge~i 295 (321)
T Consensus 141 ip-~avl~tRv~~~~~~~~~~~i~e~le-~lpvl~t~i~eR~ 180 (231)
T pfam07015 141 IP-TAILRQRVPVGRLTSSQRFCSDMLE-QLPVFDCPMHERD 180 (231)
T ss_pred CC-EEEEEEECCCCCCCHHHHHHHHHHH-CCCCCCCCCCCHH
T ss_conf 98-0334551140002178999999996-4985435420289