HHsearch alignment for GI: 254780709 and conserved domain: pfam07015

>pfam07015 VirC1 VirC1 protein. This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon which enhances T-DNA processing probably does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA.
Probab=98.73  E-value=6.6e-08  Score=75.79  Aligned_cols=159  Identities=19%  Similarity=0.257  Sum_probs=89.7

Q ss_pred             EEECC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH---HHCC--CCCCCCCCCCCHHHHHHHH
Q ss_conf             23113-5444442478999999985226742677434512456889999975---3035--3212235866124542289
Q gi|254780709|r  113 VILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD---RTSA--DFVCSEIGSDAAALAYEAF  186 (321)
Q Consensus       113 vil~v-G~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~---~~~v--~~~~~~~~~dp~~v~~~a~  186 (321)
T Consensus         3 vi~~~~~KGG~GKtT~a~~la~~~~~~g~~V~liD~Dpq~s-----~~~W~~~a~~~~~~~~~~-~v~~~~~~~~l~~~~   76 (231)
T pfam07015         3 LITFCSFKGGAGKTTALMGLCSALASDGKRVALFEADENRP-----LTKWRENALRKGTWDPAC-EIFNADELPLLEQAY   76 (231)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCC-----HHHHHHHHHHCCCCCCCC-CEECCCCHHHHHHHH
T ss_conf             79996179986599999999999996899599996899868-----899999876468888765-222056601589999


Q ss_pred             HHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCC-CCCHHH------HH----HHHHHHHH
Q ss_conf             99965148759986543332115778999989987630222343011231023-352257------78----99987643
Q gi|254780709|r  187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA-TTGQNA------LR----QVEMFHAV  255 (321)
Q Consensus       187 ~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda-~~gq~~------~~----~a~~F~~~  255 (321)
T Consensus        77 ~~~~~~~yD~VIIDtpg~~s~---~~~~------AI~~-----ADlVL--IP~qpSplD~~~a~~t~~~i~~~~~~~~~~  140 (231)
T pfam07015        77 EHAEGSGFDYALADTHGGSSE---LNNT------IIAS-----SDLLL--IPTMLTPLDIDEALATYRYVIELLLTENLA  140 (231)
T ss_pred             HHHHHCCCCEEEECCCCCCCH---HHHH------HHHH-----CCEEE--ECCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             988657999899839985758---9999------9997-----89899--778998233999999999999999973789


Q ss_pred             CCCCEEEEECCCCCCCHH--HHHHHHHHHCCCEEEEECCCCC
Q ss_conf             589769996545787069--9999999976988999758981
Q gi|254780709|r  256 AGTTGLIMTKMDGTARGG--GLIPIVVTHKIPVYFLGVGEGI  295 (321)
Q Consensus       256 ~~~~g~I~TKlD~ta~~G--~~ls~~~~~~~Pi~fig~Ge~i  295 (321)
T Consensus       141 ip-~avl~tRv~~~~~~~~~~~i~e~le-~lpvl~t~i~eR~  180 (231)
T pfam07015       141 IP-TAILRQRVPVGRLTSSQRFCSDMLE-QLPVFDCPMHERD  180 (231)
T ss_pred             CC-EEEEEEECCCCCCCHHHHHHHHHHH-CCCCCCCCCCCHH
T ss_conf             98-0334551140002178999999996-4985435420289