HHsearch alignment for GI: 254780709 and conserved domain: pfam08423
>pfam08423 Rad51 Rad51. Rad51 is a DNA repair and recombination protein and is a homologue of the bacterial ATPase RecA protein.
Probab=97.15 E-value=0.0074 Score=40.38 Aligned_cols=127 Identities=20% Similarity=0.241 Sum_probs=63.9
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHH-
Q ss_conf 8898999999999998751278998999999999878520100121000136674123113544444247899999998-
Q gi|254780709|r 57 DIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM- 135 (321)
Q Consensus 57 DVg~~va~~Iie~ik~~~~~~~i~~~~i~~~l~~~L~~~L~~~~~~~~~~~~~~p~vil~vG~nG~GKTTT~aKLA~~~- 135 (321)
T Consensus 6 ~~~f~t~~~~~~~---r~~~~~isTg------~~~LD~lLgGG-----i~---~g~ITEi~G~~gsGKTQlc~qlav~~q 68 (261)
T pfam08423 6 PMGFTTATELHQR---RSEVIRITTG------SKELDKLLGGG-----IE---TGSITEVFGEFRTGKTQLCHTLCVTCQ 68 (261)
T ss_pred CCCCCCHHHHHHH---HCCCCEECCC------CHHHHHHHCCC-----CC---CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 5787439999997---5487357789------87899873798-----66---772999989988878999999999940
Q ss_pred -----HHCCCCEEEEECC-CCCHHHHHHHHHHHHHHCCC---------CCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf -----5226742677434-51245688999997530353---------21223586612454228999965148759986
Q gi|254780709|r 136 -----SDAGLKVMLAAGD-TFRSAAIDQLKIWADRTSAD---------FVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200 (321)
Q Consensus 136 -----~~~g~kV~lva~D-tfR~aA~eQL~~~a~~~~v~---------~~~~~~~~dp~~v~~~a~~~a~~~~~DvvliD 200 (321)
T Consensus 69 lp~~~gg~~g~vvyIDTEg~f~~eRl~qi---a~~~~~~~~~~L~~I~v~r~~~~~~~~~~l~~~~~~~~~~~v~LvVvD 145 (261)
T pfam08423 69 LPLEMGGGEGKALYIDTEGTFRPERIVAI---AERFGLDPEEVLDNIAYARAYNTEHQMQLLLQAAAMMSESRFALLIVD 145 (261)
T ss_pred CHHHHCCCCCEEEEEECCCCCCHHHHHHH---HHHHCCCHHHHHHHCEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 70965699972899936888698999999---998299978987533141689989999999999998731783499983
Q ss_pred CCC
Q ss_conf 543
Q gi|254780709|r 201 TAG 203 (321)
Q Consensus 201 TAG 203 (321)
T Consensus 146 Sia 148 (261)
T pfam08423 146 SAT 148 (261)
T ss_pred CCC
T ss_conf 240