HHsearch alignment for GI: 254780709 and conserved domain: pfam09439
>pfam09439 SRPRB Signal recognition particle receptor beta subunit. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane.
Probab=96.74 E-value=0.0063 Score=40.87 Aligned_cols=98 Identities=20% Similarity=0.281 Sum_probs=52.1
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 23113544444247899999998522674267743451245688999997530353212235866124542289999651
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~ 192 (321)
T Consensus 5 tvLllGl~~sGKT~Lf~~L~~-----~~~~~-------------------------T~tS~~---~n-~~~---~~~~~~ 47 (181)
T pfam09439 5 AVIIAGLCDSGKTSLFTLLTT-----GSVRK-------------------------TVTSQE---PS-AAY---KYMNNK 47 (181)
T ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCC-------------------------EECCCC---CC-CEE---EEECCC
T ss_conf 699986899989999999975-----99487-------------------------588867---86-406---875168
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCH-HHHHHHHHHHHHC
Q ss_conf 487599865433321157789999899876302223430112310233522-5778999876435
Q gi|254780709|r 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ-NALRQVEMFHAVA 256 (321)
Q Consensus 193 ~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq-~~~~~a~~F~~~~ 256 (321)
T Consensus 48 ~~~~~lvD~PGh~klR~~~~~~~~~~---------~~~~gIVfVVDS~~~~~~l~~~Ae~Ly~iL 103 (181)
T pfam09439 48 GNSLTLIDFPGHVKLRYKLLETLKDS---------SSLRGLVFVVDSTAFPKEVTDTAEFLYDIL 103 (181)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHH---------CCCEEEEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 96689998899689999999864300---------264499999978665667999999999998