HHsearch alignment for GI: 254780709 and conserved domain: smart00177
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=96.27 E-value=0.0051 Score=41.51 Aligned_cols=139 Identities=19% Similarity=0.285 Sum_probs=72.5
Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 36674123113544444247899999998522674267743451245688999997530353212235866124542289
Q gi|254780709|r 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 (321)
Q Consensus 107 ~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~ 186 (321)
T Consensus 9 f~kk~~kililG~~~~GKTsil~~l~-----~~~~~~~----------------------~pTvg~----~~~~------ 51 (175)
T smart00177 9 FGNKEMRILMVGLDAAGKTTILYKLK-----LGESVTT----------------------IPTIGF----NVET------ 51 (175)
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHH-----CCCCCCC----------------------CCCCCC----EEEE------
T ss_conf 37888999999889999899999996-----5997775----------------------797881----0799------
Q ss_pred HHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHH-HHHHHHC---CCC---
Q ss_conf 999651487599865433321157789999899876302223430112310233522577899-9876435---897---
Q gi|254780709|r 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV-EMFHAVA---GTT--- 259 (321)
Q Consensus 187 ~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a-~~F~~~~---~~~--- 259 (321)
T Consensus 52 --~~~~~~~l~iwD~~Gqe~-----~r~l------~~~Yy~-~a~~iIfVvD~sd~~-~~~~~~~~l~~~l~~~~~~~~p 116 (175)
T smart00177 52 --VTYKNISFTVWDVGGQDK-----IRPL------WRHYYT-NTQGLIFVVDSNDRD-RIDEAREELHRMLNEDELRDAV 116 (175)
T ss_pred --EEECCEEEEEEECCCCCC-----CCHH------HHHHCC-CCCEEEEEEECCCHH-HHHHHHHHHHHHHCCHHHCCCE
T ss_conf --998989999998999854-----5536------777557-761899998668778-9999999999996315316986
Q ss_pred -EEEEECCCC-CCCH----HHHHHHHHHHCCCEEEEE----CCCCCCC
Q ss_conf -699965457-8706----999999999769889997----5898132
Q gi|254780709|r 260 -GLIMTKMDG-TARG----GGLIPIVVTHKIPVYFLG----VGEGIND 297 (321)
Q Consensus 260 -g~I~TKlD~-ta~~----G~~ls~~~~~~~Pi~fig----~Ge~i~D 297 (321)
T Consensus 117 iLil~NK~Dl~~~~~~~ei~~~l~l~~~~~~~~~i~~~SA~tG~GI~e 164 (175)
T smart00177 117 ILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYE 164 (175)
T ss_pred EEEEEECCCCCCCCCHHHHHHHHCHHHHCCCCEEEEEEECCCCCCHHH
T ss_conf 999984566767889999999968665407975999826878969899