HHsearch alignment for GI: 254780709 and conserved domain: smart00178
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=96.98 E-value=0.0066 Score=40.69 Aligned_cols=134 Identities=15% Similarity=0.179 Sum_probs=69.9
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 66741231135444442478999999985226742677434512456889999975303532122358661245422899
Q gi|254780709|r 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187 (321)
Q Consensus 108 ~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~ 187 (321)
T Consensus 14 ~~ke~~ililGLd~aGKTTil~~lk~-----~~~~~----------------------~~PT~g~~------------~e 54 (184)
T smart00178 14 WNKHAKILFLGLDNAGKTTLLHMLKN-----DRLAQ----------------------HQPTQHPT------------SE 54 (184)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHC-----CCCCC----------------------CCCCCCCC------------EE
T ss_conf 56614799996588988999999806-----99753----------------------05787886------------48
Q ss_pred HHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 99651487599865433321157789999899876302223430112310233522577899987643589769996545
Q gi|254780709|r 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267 (321)
Q Consensus 188 ~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~~~~~~g~I~TKlD 267 (321)
T Consensus 55 ~~~~~~~~~~~wDlgG~~-----------~~R~lW~~Yy~-~~~~iIfVVDssD~~r~~eak~~L~~l------------ 110 (184)
T smart00178 55 ELAIGNIKFTTFDLGGHQ-----------QARRLWKDYFP-EVNGIVYLVDAYDKERFAESKRELDAL------------ 110 (184)
T ss_pred EEEECCEEEEEEECCCCH-----------HHHHHHHHHHC-CCCEEEEEEECCCHHHHHHHHHHHHHH------------
T ss_conf 999999999999889877-----------78899998821-675899997268688999999999998------------
Q ss_pred CCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 787069999999997698899975898132555778999998728656
Q gi|254780709|r 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315 (321)
Q Consensus 268 ~ta~~G~~ls~~~~~~~Pi~fig~Ge~i~Dl~~f~~~~~~~~llG~gd 315 (321)
T Consensus 111 --------l~~~~l~~~PlLilaNKqDl~~--a~~~~ei~~-~L~L~~ 147 (184)
T smart00178 111 --------LSDEELATVPFLILGNKIDAPY--AASEDELRY-ALGLTN 147 (184)
T ss_pred --------HHHHHHCCCCEEEEEECCCCCC--CCCHHHHHH-HHCCHH
T ss_conf --------6467655970999997567778--999999998-819512