HHsearch alignment for GI: 254780709 and conserved domain: smart00487
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.43 E-value=0.003 Score=43.08 Aligned_cols=132 Identities=17% Similarity=0.209 Sum_probs=65.9
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCCCCHHHHHHHHHHHHHHC-----CC--CCCCCCC-------
Q ss_conf 1231135444442478999999985226--742677434512456889999975303-----53--2122358-------
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKMSDAG--LKVMLAAGDTFRSAAIDQLKIWADRTS-----AD--FVCSEIG------- 175 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~~~~g--~kV~lva~DtfR~aA~eQL~~~a~~~~-----v~--~~~~~~~------- 175 (321)
T Consensus 25 ~~~~i~~~tGsGKT~~~~~~~~~~~~~~~~~~~li~-~P--~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVL-VP--TRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKL 101 (201)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE-EC--CHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHH
T ss_conf 988998999960999999999998633899759999-08--599999999886010210204455652477379999999
Q ss_pred -CCCHHHHHHH---HHHH------HHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHH
Q ss_conf -6612454228---9999------65148759986543332115778999989987630222343011231023352257
Q gi|254780709|r 176 -SDAAALAYEA---FKQA------QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 (321)
Q Consensus 176 -~dp~~v~~~a---~~~a------~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~ 245 (321)
T Consensus 102 ~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~vIiDE~H~~~~~-~~~~~~~~~~~~~------~~~~~~i~lSAT~~~~~ 174 (201)
T smart00487 102 ESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDG-GFGDQLEKLLKLL------PKNVQLLLLSATPPEEI 174 (201)
T ss_pred HCCCCCEEEECHHHHHHHHHHCCCCCCCCEEEEEECHHHHHCC-CCHHHHHHHHHHC------CCCCCEEEECCCCCHHH
T ss_conf 7599989995589999999727545254319999896775125-7099999999967------99997899924898689
Q ss_pred HHHHHHHH
Q ss_conf 78999876
Q gi|254780709|r 246 LRQVEMFH 253 (321)
Q Consensus 246 ~~~a~~F~ 253 (321)
T Consensus 175 ~~~~~~~~ 182 (201)
T smart00487 175 ENLLELFL 182 (201)
T ss_pred HHHHHHHC
T ss_conf 99999978