RPSBLAST alignment for GI: 254780709 and conserved domain: TIGR00959

>gnl|CDD|162133 TIGR00959, ffh, signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. Length = 428

 Score =  176 bits (449), Expect = 6e-45
 Identities = 92/294 (31%), Positives = 151/294 (51%), Gaps = 17/294 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD-GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L+     +     + +  ++E L ++   L+ +D+ + V +  ++++  K   
Sbjct: 1   FESLSERLQRIFKKLSGRGTITEKNIKEALREIRLALLEADVNLQVVKDFIKKVKEKALG 60

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+ +  V E +  +L   +   N      P VIL+VG+ G GKTT  GKL
Sbjct: 61  QEVLKSLSPGQQFIKIVHEELVAILGGENASLNLA-KKPPTVILMVGLQGSGKTTTCGKL 119

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +    G KV+L A D +R AAI+QLK+   +          G     +A  A + A+
Sbjct: 120 AYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+I+DTAGRL  +  LM  +  +  +L       P  +L V+DA TGQ+A+   +
Sbjct: 180 ENGFDVVIVDTAGRLQIDEELMEELAAIKEILN------PDEILLVVDAMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
            F+   G TG+++TK+DG ARGG  + +      P+ F+GVGE I+DLEPF  +
Sbjct: 234 TFNERLGLTGVVLTKLDGDARGGAALSVRSVTGKPIKFIGVGEKIDDLEPFHPE 287