RPSBLAST alignment for GI: 254780709 and conserved domain: KOG0780
>gnl|CDD|35999 KOG0780, KOG0780, KOG0780, Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]. Length = 483
Score = 200 bits (509), Expect = 5e-52
Identities = 96/309 (31%), Positives = 149/309 (48%), Gaps = 25/309 (8%)
Query: 15 RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL---- 70
R++T F+ S I L+ ++E + L+ SD+ + +++ E +
Sbjct: 8 RRITSAFSRMSN------ATSIDETALNTMLKE-ICRALLESDVNPRLVKELRENIRKII 60
Query: 71 ----LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
L K +Q+ ++D EL+ K+L P +P VI+ VG+ G GKTT
Sbjct: 61 NLEKLASGVNKRRIIQKAVFD--ELV-KLLDPGKSALQPKKG-KPSVIMFVGLQGSGKTT 116
Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
KL+ G KV L DTFR+ A DQLK A + F S +D +A E
Sbjct: 117 TCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGV 176
Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
+ + + DV+I+DT+GR + L +M +V K + P ++ V+DA+ GQ A
Sbjct: 177 DRFKKENFDVIIVDTSGRHKQEASLFE---EMKQVSKAIK---PDEIIFVMDASIGQAAE 230
Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
Q F +I+TK+DG A+GGG + V K P+ F+G GE ++DLEPF K F
Sbjct: 231 AQARAFKETVDVGAVILTKLDGHAKGGGALSAVAATKSPIIFIGTGEHMDDLEPFDPKPF 290
Query: 307 SAVITGCLD 315
+ + G D
Sbjct: 291 VSRLLGMGD 299