RPSBLAST alignment for GI: 254780709 and conserved domain: KOG0780

>gnl|CDD|35999 KOG0780, KOG0780, KOG0780, Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]. Length = 483
 Score =  200 bits (509), Expect = 5e-52
 Identities = 96/309 (31%), Positives = 149/309 (48%), Gaps = 25/309 (8%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL---- 70
           R++T  F+  S          I    L+  ++E +   L+ SD+   + +++ E +    
Sbjct: 8   RRITSAFSRMSN------ATSIDETALNTMLKE-ICRALLESDVNPRLVKELRENIRKII 60

Query: 71  ----LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
               L     K   +Q+ ++D  EL+ K+L P           +P VI+ VG+ G GKTT
Sbjct: 61  NLEKLASGVNKRRIIQKAVFD--ELV-KLLDPGKSALQPKKG-KPSVIMFVGLQGSGKTT 116

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
              KL+      G KV L   DTFR+ A DQLK  A +    F  S   +D   +A E  
Sbjct: 117 TCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGV 176

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
            + + +  DV+I+DT+GR    + L     +M +V K +    P  ++ V+DA+ GQ A 
Sbjct: 177 DRFKKENFDVIIVDTSGRHKQEASLFE---EMKQVSKAIK---PDEIIFVMDASIGQAAE 230

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q   F        +I+TK+DG A+GGG +  V   K P+ F+G GE ++DLEPF  K F
Sbjct: 231 AQARAFKETVDVGAVILTKLDGHAKGGGALSAVAATKSPIIFIGTGEHMDDLEPFDPKPF 290

Query: 307 SAVITGCLD 315
            + + G  D
Sbjct: 291 VSRLLGMGD 299