HHsearch alignment for GI: 254780710 and conserved domain: COG3938
>COG3938 Proline racemase [Amino acid transport and metabolism].
Probab=98.21 E-value=5.1e-05 Score=52.99 Aligned_cols=221 Identities=17% Similarity=0.156 Sum_probs=125.1
Q ss_pred CEEEEECCCCCCEEEEECCCCCC-CCC-HHHHHHHCC------------CCCCCCCEEEEEECCCCCCCCEEEEEEECCC
Q ss_conf 11378517677389994778887-888-889987203------------5671435589982588888668999971787
Q gi|254780710|r 6 VDFAKMEGIGNKILVIDMRGCHD-NIT-SDAINALST------------DDNTHFDQIMLIHDFQDASVDAFIRIINCDG 71 (296)
Q Consensus 6 i~F~Kmhg~GNDFiiiD~~~~~~-~~~-~~~i~~~~~------------~~giG~Dgli~i~~~~~~~~d~~m~~fN~DG 71 (296)
T Consensus 7 i~~id~HteGe~grvV~GG~p~~pg~tm~Eq~~~~~~d~d~lR~~l~~EPRG~~~~~~~lL~Pp~~pda~aa~ii~eps~ 86 (341)
T COG3938 7 IHCIDCHTEGEPGRVVVGGVPPLPGATMWEQRRWFARDHDWLRNFLMFEPRGHDFRSGNLLVPPKRPDADAAVIIMEPSG 86 (341)
T ss_pred EEEECCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCHHHHHHHHEECCCCCCCEEEEEECCCCCCCCCEEEEEECCCC
T ss_conf 99970246886344897687898987689998887406488877632377887511566863899987657999974689
Q ss_pred CCCCCCCCHHHHHHHHHHCC--C----CCCEEEEEECCCCEEEEEC-CCCE---EEECCCCCCCCHHHCCCCCCCCCCCC
Q ss_conf 62123320332231110013--5----7640379835883799985-7742---77403687777776856565654344
Q gi|254780710|r 72 SEVQSCGNGMRCVVRFLTSR--M----KRKSFTFETIRGILVAKEN-RDGS---ISVDMGEPILDWKLIPLARSFDKMDR 141 (296)
Q Consensus 72 S~A~mCGNG~Rc~a~yl~~~--~----~~~~~~i~T~~g~~~~~~~-~~~~---v~V~mG~p~~~~~~ip~~~~~~~~~~ 141 (296)
T Consensus 87 ~~p-MsGsntIc~~T~lle~G~v~m~eP~t~l~letP~GlV~~~a~crdGk~E~V~l~N-vPsf~~~ld-~~vevpglG- 162 (341)
T COG3938 87 CLP-MSGSNTICVVTVLLESGLVPMQEPETVLRLETPAGLVEATAECRDGKVERVRLRN-VPSFLHRLD-ASVEVPGLG- 162 (341)
T ss_pred CCC-CCCCCCHHHHHHHHHCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCEEEEEEEC-CHHHHHHCC-CEEECCCCC-
T ss_conf 987-6788826465678875876577885379985688579999971488288999973-566686638-757657762-
Q ss_pred CEEECCCCCCCEECCEEEEECCCCEEEEECC------CCCCHHHHHHHHHCCCC---------CCCCCCCCCEEEEEECC
Q ss_conf 3011057777402130999558742797425------57686888763100023---------32375555146799728
Q gi|254780710|r 142 DRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE------DDLYHYDLASFGNLLAK---------HPMFSEGVNLSIARVTS 206 (296)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~v~iGNPH~Vi~v~------d~i~~~~l~~~g~~i~~---------~~~Fp~gvNV~fv~v~~ 206 (296)
T Consensus 163 -~l~vD-----------iAYGG~~yaiVd~~~~g~~l~~~~A~~L~~~g~~i~~a~n~~~~f~HPe~p~i~~~s~~~~~~ 230 (341)
T COG3938 163 -RLTVD-----------IAYGGNFYAIVDAQANGFDLAPDEAGELVALGVKIRQALNEQLDFVHPENPDIRGVSHCQFAG 230 (341)
T ss_pred -EEEEE-----------EEECCEEEEEEEHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEC
T ss_conf -58899-----------740755799981688176658632688988679999987521475488887657445899807
Q ss_pred C-----CEEEEEECCCCC-CCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 8-----728999804678-76656323589999999981788
Q gi|254780710|r 207 L-----ESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242 (296)
Q Consensus 207 ~-----~~I~iRt~ERGv-GeTlACGTGA~Asa~~~~~~~~~ 242 (296)
T Consensus 231 ~~~~~~~~~Rnav~~~p~~~DRSPcGTGtSArmA~L~AkGkl 272 (341)
T COG3938 231 PPVRPGADLRNAVFYGPKAIDRSPCGTGTSARMAVLHAKGKL 272 (341)
T ss_pred CCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 876767555413897887545588877506778998745775