HHsearch alignment for GI: 254780710 and conserved domain: PRK00450
>PRK00450 dapF diaminopimelate epimerase; Provisional.
Probab=100.00 E-value=0 Score=638.20 Aligned_cols=272 Identities=38% Similarity=0.624 Sum_probs=246.8
Q ss_pred C-CEEEEECCCCCCEEEEECCCCCCCCCHHHHHHHCCC-CCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCHHH
Q ss_conf 4-113785176773899947788878888899872035-67143558998258888866899997178762123320332
Q gi|254780710|r 5 M-VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMR 82 (296)
Q Consensus 5 m-i~F~Kmhg~GNDFiiiD~~~~~~~~~~~~i~~~~~~-~giG~Dgli~i~~~~~~~~d~~m~~fN~DGS~A~mCGNG~R 82 (296)
T Consensus 1 M~i~F~KmhG~GNDFiiid~~~~~~~~~~~~i~~lcdR~~GIGaDgll~i~~~~~~~~d~~m~ifN~DGS~AemCGNG~R 80 (278)
T PRK00450 1 MKMKFTKMHGLGNDFVVIDARDQDLTPTPELARALCDRHFGIGADGLLLVEPPPSPGADFRMRIFNADGSEAEMCGNGAR 80 (278)
T ss_pred CCCEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCHHHCCCCHHH
T ss_conf 93189999738982999979988789999999986256888688779999358898847899999399986752737899
Q ss_pred HHHHHHHCC--CCCCEEEEEECCCCEEEEECCCCEEEECCCCCCCCHHHCCCCCCCCCCCCCEEECCCCCCCEECCEEEE
Q ss_conf 231110013--576403798358837999857742774036877777768565656543443011057777402130999
Q gi|254780710|r 83 CVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160 (296)
Q Consensus 83 c~a~yl~~~--~~~~~~~i~T~~g~~~~~~~~~~~v~V~mG~p~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 160 (296)
T Consensus 81 Cva~~l~~~~~~~~~~~~i~T~~G~~~~~~~~~~~i~V~MG~p~~~~~~ip~~~~~~~~~~~~~-----~~~~~~~~~~v 155 (278)
T PRK00450 81 CFARFVYDKGLTNKTEIRVETLAGIIELEVEDDGLVTVDMGEPRFEPAEIPFAAEAEKTYILEL-----QVGPTFECTAV 155 (278)
T ss_pred HHHHHHHHCCCCCCCCEEEEECCCEEEEEEECCCEEEEECCCCCCCHHHCCCCCCCCCCCEEEC-----CCCCCEEEEEE
T ss_conf 9999999808888871899968953999992698199981587447755866554453201201-----46871479999
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 55874279742557686888763100023323755551467997288728999804678766563235899999999817
Q gi|254780710|r 161 SMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 (296)
Q Consensus 161 ~iGNPH~Vi~v~d~i~~~~l~~~g~~i~~~~~Fp~gvNV~fv~v~~~~~I~iRt~ERGvGeTlACGTGA~Asa~~~~~~~ 240 (296)
T Consensus 156 ~~GnPH~V~fv~-d~~~~~~~~~g~~i~~~~~Fp~g~NV~fv~v~~~~~i~vrt~ERGvGeTlACGTGa~Aaa~~a~~~g 234 (278)
T PRK00450 156 SMGNPHAVIFVD-DVDAAPVEELGPLLENHPRFPEGVNVGFVQVVDRDHIRLRVYERGVGETLACGTGACAAAVAAIRLG 234 (278)
T ss_pred ECCCCEEEEEEC-CCCHHHHHHHCCHHCCCCCCCCCCEEEEEEEECCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 559985999967-6012227664602013767878616999999069929999995268745255342889999999838
Q ss_pred CCCC-CEEEECCCCEEEEEEEC-CCEEEEEECEEEEEEEEEEEC
Q ss_conf 8898-07999079579999958-981999946289998899841
Q gi|254780710|r 241 KTNR-AVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 (296)
Q Consensus 241 ~~~~-~v~V~~pGG~L~v~~~~-~~~i~l~Gpa~~vf~G~~~i~ 282 (296)
T Consensus 235 ~~~~~~v~V~~~GG~L~V~~~~~~~~v~l~Gpa~~vf~G~i~~e 278 (278)
T PRK00450 235 LLDTEPVTVHLPGGTLTIEWKGDGDPVYMTGPATHVFDGEIDLE 278 (278)
T ss_pred CCCCCEEEEECCCCEEEEEEECCCCEEEEECCCEEEEEEEEECC
T ss_conf 89994699996995799999889985999907799999999779