HHsearch alignment for GI: 254780710 and conserved domain: pfam01678

>pfam01678 DAP_epimerase Diaminopimelate epimerase. Diaminopimelate epimerase contains two domains of the same alpha/beta fold, both contained in this family.
Probab=99.95  E-value=1.6e-27  Score=201.25  Aligned_cols=116  Identities=29%  Similarity=0.426  Sum_probs=103.1

Q ss_pred             EEEECCCCCCEEEEECCCCCCCCCHHHHHHHCCC-CCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCH-HHHHH
Q ss_conf             3785176773899947788878888899872035-671435589982588888668999971787621233203-32231
Q gi|254780710|r    8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNG-MRCVV   85 (296)
Q Consensus         8 F~Kmhg~GNDFiiiD~~~~~~~~~~~~i~~~~~~-~giG~Dgli~i~~~~~~~~d~~m~~fN~DGS~A~mCGNG-~Rc~a   85 (296)
T Consensus         1 f~K~~G~gn~fi~vd~~~~~~~~~~~~~~~l~~r~~~~g~dnv~~v~~~~--~~~~~~ri~n~dg~et~aCGnGa~rc~a   78 (121)
T pfam01678         1 FAKMHGNPHDVVVVDDVEGANLLEPELGPALCHRHFFPGADNVLFVQVSG--ELDIKMRIFNRDGSETEACGNGAVACFA   78 (121)
T ss_pred             CCCEECCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEEEEEECC--CCCEEEEEEECCCCHHHCCCCHHHHHHH
T ss_conf             97456899799999278777767888989865577799841489987168--8718999991899820235464799999


Q ss_pred             HHHHCC--CCCCEEEEEECCCCEEEEECCCCEEEECCCCCCC
Q ss_conf             110013--5764037983588379998577427740368777
Q gi|254780710|r   86 RFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPIL  125 (296)
Q Consensus        86 ~yl~~~--~~~~~~~i~T~~g~~~~~~~~~~~v~V~mG~p~~  125 (296)
T Consensus        79 ~~~~~~~~~~~~~v~v~t~gG~l~v~~~~~~~v~v~~G~a~~  120 (121)
T pfam01678        79 AAVYLGGLVTKKPVLVETPGGDLEIEVKDDGHVIVMMGPAVL  120 (121)
T ss_pred             HHHHHCCCCCCCEEEEEECCEEEEEEEECCCCEEEEECCCEE
T ss_conf             999986998898799997991899999899989998358869