HHsearch alignment for GI: 254780710 and conserved domain: pfam01678
>pfam01678 DAP_epimerase Diaminopimelate epimerase. Diaminopimelate epimerase contains two domains of the same alpha/beta fold, both contained in this family.
Probab=99.95 E-value=1.6e-27 Score=201.25 Aligned_cols=116 Identities=29% Similarity=0.426 Sum_probs=103.1
Q ss_pred EEEECCCCCCEEEEECCCCCCCCCHHHHHHHCCC-CCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCH-HHHHH
Q ss_conf 3785176773899947788878888899872035-671435589982588888668999971787621233203-32231
Q gi|254780710|r 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNG-MRCVV 85 (296)
Q Consensus 8 F~Kmhg~GNDFiiiD~~~~~~~~~~~~i~~~~~~-~giG~Dgli~i~~~~~~~~d~~m~~fN~DGS~A~mCGNG-~Rc~a 85 (296)
T Consensus 1 f~K~~G~gn~fi~vd~~~~~~~~~~~~~~~l~~r~~~~g~dnv~~v~~~~--~~~~~~ri~n~dg~et~aCGnGa~rc~a 78 (121)
T pfam01678 1 FAKMHGNPHDVVVVDDVEGANLLEPELGPALCHRHFFPGADNVLFVQVSG--ELDIKMRIFNRDGSETEACGNGAVACFA 78 (121)
T ss_pred CCCEECCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEEEEEECC--CCCEEEEEEECCCCHHHCCCCHHHHHHH
T ss_conf 97456899799999278777767888989865577799841489987168--8718999991899820235464799999
Q ss_pred HHHHCC--CCCCEEEEEECCCCEEEEECCCCEEEECCCCCCC
Q ss_conf 110013--5764037983588379998577427740368777
Q gi|254780710|r 86 RFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 (296)
Q Consensus 86 ~yl~~~--~~~~~~~i~T~~g~~~~~~~~~~~v~V~mG~p~~ 125 (296)
T Consensus 79 ~~~~~~~~~~~~~v~v~t~gG~l~v~~~~~~~v~v~~G~a~~ 120 (121)
T pfam01678 79 AAVYLGGLVTKKPVLVETPGGDLEIEVKDDGHVIVMMGPAVL 120 (121)
T ss_pred HHHHHCCCCCCCEEEEEECCEEEEEEEECCCCEEEEECCCEE
T ss_conf 999986998898799997991899999899989998358869