HHsearch alignment for GI: 254780710 and conserved domain: pfam01678

>pfam01678 DAP_epimerase Diaminopimelate epimerase. Diaminopimelate epimerase contains two domains of the same alpha/beta fold, both contained in this family.

Probab=99.89  E-value=7.1e-23  Score=170.69  Aligned_cols=113  Identities=30%  Similarity=0.454  Sum_probs=97.8

Q ss_pred             ECCCCEEEEECCCCCCHHHH--HHHHHCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             55874279742557686888--7631000233237555514679972887289998046787665632358999999998
Q gi|254780710|r  161 SMGNPHAIFFVEDDLYHYDL--ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC  238 (296)
Q Consensus       161 ~iGNPH~Vi~v~d~i~~~~l--~~~g~~i~~~~~Fp~gvNV~fv~v~~~~~I~iRt~ERGvGeTlACGTGA~Asa~~~~~  238 (296)
T Consensus         4 ~~G~gn~fi~vd-~~~~~~~~~~~~~~~l~~r~~~~g~dnv~~v~~~~~~~~~~ri~n~dg~et~aCGnGa~rc~a~~~~   82 (121)
T pfam01678         4 MHGNPHDVVVVD-DVEGANLLEPELGPALCHRHFFPGADNVLFVQVSGELDIKMRIFNRDGSETEACGNGAVACFAAAVY   82 (121)
T ss_pred             EECCCCEEEEEE-CCCCCCCCCHHHHHHHHCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCHHHCCCCHHHHHHHHHHH
T ss_conf             568997999992-7877776788898986557779984148998716887189999918998202354647999999999


Q ss_pred             HCCC--CCCEEEECCCCEEEEEEECCCE-EEEEECEEEE
Q ss_conf             1788--9807999079579999958981-9999462899
Q gi|254780710|r  239 LHKT--NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKE  274 (296)
Q Consensus       239 ~~~~--~~~v~V~~pGG~L~v~~~~~~~-i~l~Gpa~~v  274 (296)
T Consensus        83 ~~~~~~~~~v~v~t~gG~l~v~~~~~~~v~v~~G~a~~v  121 (121)
T pfam01678        83 LGGLVTKKPVLVETPGGDLEIEVKDDGHVIVMMGPAVLV  121 (121)
T ss_pred             HCCCCCCCEEEEEECCEEEEEEEECCCCEEEEECCCEEC
T ss_conf             869988987999979918999998999899983588699