HHsearch alignment for GI: 254780710 and conserved domain: pfam04303

>pfam04303 PrpF PrpF protein. PrpF is a protein found in the 2-methylcitrate pathway. It is structurally similar to DAP epimerase and proline racemase. This protein is likely to acts to isomerize trans-aconitate to cis-aconitate.
Probab=95.86  E-value=0.16  Score=29.85  Aligned_cols=228  Identities=15%  Similarity=0.122  Sum_probs=116.0

Q ss_pred             CCCCC-----CEEEEEECCCCCCCCEEEEEE-----ECCCCCCCCCCCHHHHHHHHHHCC--C----CCCEEEE-EECCC
Q ss_conf             67143-----558998258888866899997-----178762123320332231110013--5----7640379-83588
Q gi|254780710|r   42 DNTHF-----DQIMLIHDFQDASVDAFIRII-----NCDGSEVQSCGNGMRCVVRFLTSR--M----KRKSFTF-ETIRG  104 (296)
Q Consensus        42 ~giG~-----Dgli~i~~~~~~~~d~~m~~f-----N~DGS~A~mCGNG~Rc~a~yl~~~--~----~~~~~~i-~T~~g  104 (296)
T Consensus        48 DGlGG~~s~tSKvaIv~~s~~~~~DVdY~F~QV~v~~~~VD~~~NCGN~~saVgpfAie~GlV~~~~~~t~VrI~n~NT~  127 (371)
T pfam04303        48 DGIGGGNSSTSKVAIISKSSTPDHDVDYLFGQVSIDEQFVDWSGNCGNLSAAVGPFAIEAGLVPARIPVTAVRIWNVNTG  127 (371)
T ss_pred             CCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCC
T ss_conf             77778777664399994688899741688999864685343678864455401457876396426899789999984789


Q ss_pred             C-EEEE-ECCCCEEEEC----C-CCCCCC---------------HHHCCCCCCCCCCCCCEEECCCCCCCEECCEEEEEC
Q ss_conf             3-7999-8577427740----3-687777---------------776856565654344301105777740213099955
Q gi|254780710|r  105 I-LVAK-ENRDGSISVD----M-GEPILD---------------WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM  162 (296)
Q Consensus       105 ~-~~~~-~~~~~~v~V~----m-G~p~~~---------------~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i  162 (296)
T Consensus       128 ~~i~~~v~~~~G~~~~~Gd~~I~GVpGt~a~I~l~F~~p~Gs~TG~LlPTGn~~D~-----i~~~---g-g~i~vT~IDa  198 (371)
T pfam04303       128 KTIEAHVPTPNGQVQYDGDFEIDGVPGPGAPIALTFLDAAGDGTGALFPTGNLIDT-----LDVP---G-GTVEVTCIDA  198 (371)
T ss_pred             CEEEEEEECCCCCCCCCCCEECCCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEEE-----EECC---C-CEEEEEEEEC
T ss_conf             87999996689941335873427756788851521578556668887999980379-----9728---9-6299999956


Q ss_pred             CCCEEEEECCC----------CCCH-HHHHHHHHCCCC-----------------CCCCCCCCCEEEEEEC---------
Q ss_conf             87427974255----------7686-888763100023-----------------3237555514679972---------
Q gi|254780710|r  163 GNPHAIFFVED----------DLYH-YDLASFGNLLAK-----------------HPMFSEGVNLSIARVT---------  205 (296)
Q Consensus       163 GNPH~Vi~v~d----------~i~~-~~l~~~g~~i~~-----------------~~~Fp~gvNV~fv~v~---------  205 (296)
T Consensus       199 a~P~Vfv~A~dlGltG~E~p~el~a~~~ll~rlE~IR~~aa~~MGl~~d~~~a~~~~~iP---Ki~lVs~P~~y~~~~G~  275 (371)
T pfam04303       199 AIPMVFVEAESLGYTGTELAEEINADPQLLARFETLRAAAALRMGLIGDVEDMVLRQHTP---KPAFVSPPEDYKASGGK  275 (371)
T ss_pred             CCCEEEEEHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCC---EEEEEECCCCCCCCCCC
T ss_conf             883899888994998201277662499999999999999999716789967850568998---69999588546567883


Q ss_pred             ----CCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHC---------CCCCCEEEECCCCEEEEEEE--C-CCE---EE
Q ss_conf             ----88728999804678766563235899999999817---------88980799907957999995--8-981---99
Q gi|254780710|r  206 ----SLESLDLRTWERGVGLTAACGSAACASVVASGCLH---------KTNRAVSVKMLGGGLLIEWH--D-NNH---VF  266 (296)
Q Consensus       206 ----~~~~I~iRt~ERGvGeTlACGTGA~Asa~~~~~~~---------~~~~~v~V~~pGG~L~v~~~--~-~~~---i~  266 (296)
T Consensus       276 ~~~~~~~Di~~R~fs~~~~H~a~~vTgavcla~Aa~i~GTV~~~~~~~~~~~~v~I~HPsG~i~v~~~~~~~~~~v~~a~  355 (371)
T pfam04303       276 WVSAVEIDLLVRAFSMGKLHHALAGTGAVAIATAAAVPGTLVNLAAGGGERTVVRFGHPSGTLDVGAEATQQDGTVLRAI  355 (371)
T ss_pred             CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCEEEEECCCEEEEEEEEEECCCCCEEEEE
T ss_conf             52255567899980341002133367899999998279957898606799855999679817999999756899589999


Q ss_pred             EEECEEEEEEEEEEE
Q ss_conf             994628999889984
Q gi|254780710|r  267 MTGEAKKEWEGKLDI  281 (296)
Q Consensus       267 l~Gpa~~vf~G~~~i  281 (296)
T Consensus       356 v~RTAR~Lm~G~V~v  370 (371)
T pfam04303       356 ISRTARRLMEGWVRV  370 (371)
T ss_pred             EEECCHHHCCEEEEC
T ss_conf             996013425377969