Query gi|254780710|ref|YP_003065123.1| diaminopimelate epimerase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 296
No_of_seqs 115 out of 2293
Neff 6.6
Searched_HMMs 33803
Date Wed Jun 1 14:40:54 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780710.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2otn_A Diaminopimelate epimer 100.0 0 0 392.6 18.3 188 78-270 1-197 (197)
2 >2gke_A DAP epimerase, diamino 100.0 0 0 323.3 28.7 270 6-281 1-274 (274)
3 >3fve_A DAP epimerase, diamino 100.0 1.4E-43 0 306.8 25.4 263 6-283 2-285 (290)
4 >3ejx_A DAP epimerase, diamino 100.0 6.7E-38 2E-42 269.3 28.4 279 5-285 26-315 (317)
5 >1tm0_A Proline racemase; stru 100.0 1.2E-38 3.5E-43 274.3 18.0 290 3-296 4-348 (350)
6 >1ym5_A YHI9, hypothetical 32. 100.0 4.6E-39 1.4E-43 277.0 15.3 263 8-284 13-297 (300)
7 >1qya_A ORFB, hypothetical pro 100.0 3.8E-38 1.1E-42 271.0 12.7 263 8-281 21-305 (307)
8 >1s7j_A Phenazine biosynthesis 100.0 4.8E-36 1.4E-40 257.1 19.0 245 8-282 11-261 (262)
9 >2azp_A Hypothetical protein P 100.0 2.3E-36 6.9E-41 259.1 14.8 272 5-284 5-313 (318)
10 >1u0k_A Gene product PA4716; s 100.0 7E-35 2.1E-39 249.4 16.0 264 8-284 13-287 (288)
11 >3edn_A Phenazine biosynthesis 100.0 8.2E-35 2.4E-39 249.0 15.2 259 7-281 11-299 (299)
12 >1w61_A B-cell mitogen; racema 100.0 4.5E-30 1.3E-34 217.7 24.4 274 3-285 43-383 (414)
13 >2otn_A Diaminopimelate epimer 99.9 1.3E-22 3.8E-27 168.5 8.4 73 6-80 24-99 (111)
14 >3g7k_A 3-methylitaconate isom 99.9 3.7E-20 1.1E-24 152.4 14.9 269 6-286 19-379 (391)
15 >1xub_A Phenazine biosynthesis 99.6 1.2E-14 3.7E-19 115.9 10.1 103 157-262 26-135 (136)
16 >1xub_A Phenazine biosynthesis 98.1 3.2E-05 9.6E-10 53.8 8.9 109 8-124 30-141 (162)
17 >1u0k_A Gene product PA4716; s 96.6 0.037 1.1E-06 33.7 10.4 98 162-266 19-118 (288)
18 >1qya_A ORFB, hypothetical pro 96.6 0.036 1.1E-06 33.8 10.1 94 162-263 27-121 (307)
19 >2gke_A DAP epimerase, diamino 96.5 0.072 2.1E-06 31.8 12.5 105 160-268 7-117 (274)
20 >1s7j_A Phenazine biosynthesis 96.3 0.086 2.5E-06 31.3 12.6 100 162-270 17-117 (262)
21 >1xub_A Phenazine biosynthesis 96.3 0.077 2.3E-06 31.6 10.1 102 162-272 36-142 (162)
22 >3ejx_A DAP epimerase, diamino 95.8 0.15 4.5E-06 29.6 10.6 105 161-266 34-142 (317)
23 >2azp_A Hypothetical protein P 94.8 0.3 8.8E-06 27.7 13.3 119 160-279 12-145 (318)
24 >3fve_A DAP epimerase, diamino 93.7 0.46 1.4E-05 26.5 7.8 57 206-262 69-126 (290)
25 >1tm0_A Proline racemase; stru 93.2 0.61 1.8E-05 25.7 10.4 102 161-263 14-133 (350)
26 >3edn_A Phenazine biosynthesis 93.0 0.67 2E-05 25.4 10.6 93 162-262 18-112 (299)
27 >1sr8_A Cobalamin biosynthesis 73.7 3 8.8E-05 21.1 3.0 16 244-259 64-80 (193)
28 >3hia_A Choline binding protei 57.0 5.2 0.00016 19.5 1.6 12 63-74 24-35 (35)
29 >1mjt_A Nitric-oxide synthase 23.9 16 0.00047 16.3 -0.4 51 78-128 58-129 (184)
30 >1otg_A 5-carboxymethyl-2-hydr 22.4 43 0.0013 13.5 1.6 38 165-202 1-44 (125)
31 >1yy9_A Epidermal growth facto 21.3 47 0.0014 13.2 1.7 26 61-87 9-40 (93)
32 >1xvs_A Protein APAG; MCSG APC 21.2 48 0.0014 13.2 3.0 20 63-82 50-69 (126)
No 1
>>2otn_A Diaminopimelate epimerase; DAP, lysine metabolism, X-RAY, lanthionine, isomeras; 2.40A {Bacillus anthracis str} (A:97-293)
Probab=100.00 E-value=0 Score=392.56 Aligned_cols=188 Identities=37% Similarity=0.654 Sum_probs=168.0
Q ss_pred CCHHHHHHHHHHCC--CCCCEEEEEECCCCEEEEECCCC----EEEECCCCCCCCHHHCCCCCCCCCCCCC-EEECCCCC
Q ss_conf 20332231110013--57640379835883799985774----2774036877777768565656543443-01105777
Q gi|254780710|r 78 GNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISVDMGEPILDWKLIPLARSFDKMDRD-RFHIGPVN 150 (296)
Q Consensus 78 GNG~Rc~a~yl~~~--~~~~~~~i~T~~g~~~~~~~~~~----~v~V~mG~p~~~~~~ip~~~~~~~~~~~-~~~~~~~~ 150 (296)
|||+||+++||+++ ..++++.|+|.+|++.++...++ .|+|+||.|+|.++++|+....+....+ .+..
T Consensus 1 GNG~Rc~a~~l~~~g~~~~~~~~i~T~aG~~~~~~~~~~~~~~~v~V~MG~p~~~~~~ip~~~~~~~~~~~~~~~~---- 76 (197)
T 2otn_A 1 GNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKIDMGAPRLTRAEIPMLGEGETPFIRENFLY---- 76 (197)
T ss_dssp TTTHHHHHHHHHHTTSCSSSEEEEEETTEEEEEEEEESSSSEEEEEEEEECCBCSGGGTTCCSSCCSSSEEEEEEE----
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEECCCCCEEEEEEECCCEEEEEEEECCCCEECHHHCCCCCCCCCCCCCEEEEC----
T ss_conf 5168888857655277644211101048717899973276158998633685644001332122466332101320----
Q ss_pred CCEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCHHHHH
Q ss_conf 74021309995587427974255768688876310002332375555146799728872899980467876656323589
Q gi|254780710|r 151 HLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 (296)
Q Consensus 151 ~~~~~~~~~v~iGNPH~Vi~v~d~i~~~~l~~~g~~i~~~~~Fp~gvNV~fv~v~~~~~I~iRt~ERGvGeTlACGTGA~ 230 (296)
......+++|+|||||||+|++ +++.+++..+|+.+++||.||+|+||+|+|++++++|++||||||+|||+|||||||
T Consensus 77 ~~~~~~~~~v~~GnPH~V~fv~-~~~~~~~~~~g~~i~~~~~FP~g~NV~fv~v~~~~~i~~Rt~ERG~geTlACGTGac 155 (197)
T 2otn_A 77 NNHRYAFTAVSMGNPHAVIFVD-DVEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGAC 155 (197)
T ss_dssp TTEEEEEEEEESSSEEEEEECS-CGGGSCTTTHHHHHHTCTTCTTCCEEEEEEEEETTEEEEEEECSSSCBCSCCHHHHH
T ss_pred CCCCEEEEEEECCCCEEEEEEE-EECCCCHHCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCHHHHH
T ss_conf 4761026999638950899984-001233110064001434476543224678740433899996478863335005689
Q ss_pred HHHHHHHHHCCCC--CCEEEECCCCEEEEEEECCCEEEEEEC
Q ss_conf 9999999817889--807999079579999958981999946
Q gi|254780710|r 231 ASVVASGCLHKTN--RAVSVKMLGGGLLIEWHDNNHVFMTGE 270 (296)
Q Consensus 231 Asa~~~~~~~~~~--~~v~V~~pGG~L~v~~~~~~~i~l~Gp 270 (296)
|+|+++.++++++ .+++|++|||+|.|+|.++++|+|+||
T Consensus 156 Aaa~~a~~~g~~~~~~~v~V~~~GG~L~V~~~~~~~i~ltGP 197 (197)
T 2otn_A 156 AAVVASILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGP 197 (197)
T ss_dssp HHHHHHHHTTSSCTTCCEEEECSSCEEEEEECTTSCEEEEEE
T ss_pred HHHHHHHHHCCCCCCCEEEEECCCCEEEEEEECCCCEEEEEC
T ss_conf 999999984756789879999799789999957995999927
No 2
>>2gke_A DAP epimerase, diaminopimelate epimerase; enzyme-inhibitor complex, covalently bound inhibitor, isomerase; HET: ZDP; 1.35A {Haemophilus influenzae} (A:)
Probab=100.00 E-value=0 Score=323.32 Aligned_cols=270 Identities=35% Similarity=0.587 Sum_probs=237.9
Q ss_pred CEEEEECCCCCCEEEEECCCCCCCCCHHHHHHHCCC-CCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCHHHHH
Q ss_conf 113785176773899947788878888899872035-6714355899825888886689999717876212332033223
Q gi|254780710|r 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCV 84 (296)
Q Consensus 6 i~F~Kmhg~GNDFiiiD~~~~~~~~~~~~i~~~~~~-~giG~Dgli~i~~~~~~~~d~~m~~fN~DGS~A~mCGNG~Rc~ 84 (296)
|+|+|+|+.||+|+||+..+....++.+..++++.+ +|+++|+.+|+.|+.+..+|++|+|||+||||++|||||+||+
T Consensus 1 ~~F~~~~~~GN~~~Vv~~~~~~~~l~~~~~q~ia~e~r~~~~~~~~fv~~~~~~~~~~~~r~f~~~G~e~~~CGh~t~a~ 80 (274)
T 2gke_A 1 MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHYRIFNADGSEVSQCGNGARCF 80 (274)
T ss_dssp CEEEEEEETTEEEEEEECSSSCCCCCHHHHHHHHCTTTSCCCSEEEEEECCSSTTSSEEEEEEETTSCEESCCHHHHHHH
T ss_pred CEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCHHHHHHHHHHHH
T ss_conf 98999864998399997898867899999998756687857657999972778875506898606645765311388999
Q ss_pred HHHHHCC--CCCCEEEEEECCCCEEEEECCCCEEEECCCCCCCCHHHCCCCCCCCCCCCCEEECCCCCCCEECCEEEEEC
Q ss_conf 1110013--57640379835883799985774277403687777776856565654344301105777740213099955
Q gi|254780710|r 85 VRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM 162 (296)
Q Consensus 85 a~yl~~~--~~~~~~~i~T~~g~~~~~~~~~~~v~V~mG~p~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i 162 (296)
+++|+++ ...+.+.++|.+|.+.++...++.+.++++.|.+....+|......... ....... ....+..+++
T Consensus 81 a~~l~~~~~~~~~~~~l~t~~g~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~ 155 (274)
T 2gke_A 81 ARFVTLKGLTNKKDISVSTQKGNMVLTVKDDNQIRVNMGEPIWEPAKIPFTANKFEKN---YILRTDI--QTVLCGAVSM 155 (274)
T ss_dssp HHHHHHTTSCCCSEEEEECSSCEEEEEECTTSCEEEECCCCBCCGGGTTCCCSSCCSS---EEEECSS--CEEEEEEEES
T ss_pred HHHHHHHCCCCCCEEEEEECCCCEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCC---EEEECCC--CEEEEEEEEC
T ss_conf 9999862235431269996587247752136258741210235543244444444210---0330122--1178999951
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 87427974255768688876310002332375555146799728872899980467876656323589999999981788
Q gi|254780710|r 163 GNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 (296)
Q Consensus 163 GNPH~Vi~v~d~i~~~~l~~~g~~i~~~~~Fp~gvNV~fv~v~~~~~I~iRt~ERGvGeTlACGTGA~Asa~~~~~~~~~ 242 (296)
|+||++++++ +.+..++..+.+.++.++.|+++.|+.|++..+++.++.|+||||+|.|.+||||++|++++++..+++
T Consensus 156 g~~~l~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~f~p~~g~~ed~gTGsaa~~l~~~~~~~~ 234 (274)
T 2gke_A 156 GNPHCVVQVD-DIQTANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGLL 234 (274)
T ss_dssp SSEEEEEECS-CTTTSCHHHHHHHHHTCTTCTTCCEEEEEEEEETTEEEEEEEETTTEECSCCHHHHHHHHHHHHHTTSS
T ss_pred CCCCEEEEEE-CCCHHHHHHHCHHHHCCCCCCCCCCCCEEEEECCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 8996799960-310336977573553023212235540368832884999997577510245661178999999982989
Q ss_pred CCCEEEECCCCEEEEEEE-CCCEEEEEECEEEEEEEEEEE
Q ss_conf 980799907957999995-898199994628999889984
Q gi|254780710|r 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 (296)
Q Consensus 243 ~~~v~V~~pGG~L~v~~~-~~~~i~l~Gpa~~vf~G~~~i 281 (296)
++...+..|||.+.+++. ++++|+++|+|.++++|++.|
T Consensus 235 ~~~~~~~~~~G~~~v~~~~~~~~v~i~G~a~~~~~g~~~i 274 (274)
T 2gke_A 235 NNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274 (274)
T ss_dssp CSEEEEEETTEEEEEEECCTTSCEEEEECCEEEEEEECCC
T ss_pred CCCEEEECCCCEEEEEEECCCCEEEEEECCEEEEEEEEEC
T ss_conf 9718999289779999987998899990529999999989
No 3
>>3fve_A DAP epimerase, diaminopimelate epimerase; alpha/beta, amino-acid biosynthesis, cytoplasm, isomerase, lysine biosynthesis; 2.60A {Mycobacterium tuberculosis} (A:)
Probab=100.00 E-value=1.4e-43 Score=306.82 Aligned_cols=263 Identities=21% Similarity=0.261 Sum_probs=208.8
Q ss_pred CEEEEECCCCCCEEEEECCCCCCCCCHH-HHHHHCCCCCCCCCEEEEEE--------------CCCCCCCCEEEEEEECC
Q ss_conf 1137851767738999477888788888-99872035671435589982--------------58888866899997178
Q gi|254780710|r 6 VDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIH--------------DFQDASVDAFIRIINCD 70 (296)
Q Consensus 6 i~F~Kmhg~GNDFiiiD~~~~~~~~~~~-~i~~~~~~~giG~Dgli~i~--------------~~~~~~~d~~m~~fN~D 70 (296)
|+|+|||++||||+|+|........... ++..+.++.+++.||+++|. ++.++.+||+|+|||+|
T Consensus 2 ~~f~k~~~~Gn~~~ivd~f~~~~~~Gn~~av~~~~~~~~l~~~~~~~ia~~~~~~et~f~~~~~~~~~~~~~~~r~f~~~ 81 (290)
T 3fve_A 2 MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVLDSLPEGVRVTDWYMDYRNAD 81 (290)
T ss_dssp EEEEEEESSSCEEEEEECTTCCSCCCHHHHHHHHCTTTSCCCSEEEEEEEHHHHHHTTSCSSCCTTCCTTSEEEEEEETT
T ss_pred CEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
T ss_conf 87997343897099996897767999999998627788867787999714664332222234656665655699998899
Q ss_pred CCCCCCCCCHHHHHHHHHHCC--CCCCEEEEEECCCCEEEEECCCCEEEECCCCCCCCHHHCCCCCCCCCCCCCEEECCC
Q ss_conf 762123320332231110013--576403798358837999857742774036877777768565656543443011057
Q gi|254780710|r 71 GSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGP 148 (296)
Q Consensus 71 GS~A~mCGNG~Rc~a~yl~~~--~~~~~~~i~T~~g~~~~~~~~~~~v~V~mG~p~~~~~~ip~~~~~~~~~~~~~~~~~ 148 (296)
|||+.|||||+||+|+||+++ ..+.++.++|.+|++.++...++...+.+..|.......+... .
T Consensus 82 G~E~~~CGh~t~~~a~~l~~~~~~~~~~~~~~t~~g~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~ 148 (290)
T 3fve_A 82 GSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPVTCHHVEAAYADVSVDMGKANRLGAGE-------------A 148 (290)
T ss_dssp SCBCCTTCTTHHHHHHHHHHTTSCCCSEEEEECTTCCEEEEEEEECSSEEEEEEECCCCEEEEEEE-------------B
T ss_pred CCHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEECCCCCCCEEEECCCCCCCCCCCC-------------C
T ss_conf 887765747899999999986887310166542157235565114454421685365322236542-------------1
Q ss_pred CCCCEECCEEEEECCCCEEEEECCCCCCHHHHHH---HHHCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCC
Q ss_conf 7774021309995587427974255768688876---3100023323755551467997288728999804678766563
Q gi|254780710|r 149 VNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS---FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225 (296)
Q Consensus 149 ~~~~~~~~~~~v~iGNPH~Vi~v~d~i~~~~l~~---~g~~i~~~~~Fp~gvNV~fv~v~~~~~I~iRt~ERGvGeTlAC 225 (296)
........+..+++|+||++++++ +.+...... ..+.+...+.|+.++||.+++..+++.+++|+||||.|.|.+|
T Consensus 149 ~~~~~~~~~~~v~~g~~~~vv~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~R~f~~~~g~~ed~ 227 (290)
T 3fve_A 149 VVGGRRFHGLAVDVGNPHLACVDS-QLTVDGLAALDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSC 227 (290)
T ss_dssp C-----CEEEEEESSSEEEEEEET-TCCTTTTCSCCCC--CCBCTTTCTTCCEEEEEECCBTTEEEEEEEBTTTBSCSCC
T ss_pred EEEEECCEEEEEECCCCEEEEEEC-CCCCCCHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCC
T ss_conf 233201105998058952899831-1000324456533751115545866202478997157832777532467866463
Q ss_pred HHHHHHHHHHHHHHCCCC-CCEEEECCCCEEEEEEECCCEEEEEECEEEEEEEEEEECC
Q ss_conf 235899999999817889-8079990795799999589819999462899988998413
Q gi|254780710|r 226 GSAACASVVASGCLHKTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 (296)
Q Consensus 226 GTGA~Asa~~~~~~~~~~-~~v~V~~pGG~L~v~~~~~~~i~l~Gpa~~vf~G~~~i~~ 283 (296)
|||++|+++++++.++.. ..+++.++||.|+++|. ++.|+++|+|..+++|++.|..
T Consensus 228 ~TGsaa~~l~~~l~~~~~~~~~~v~~~gG~l~v~~~-~~~v~i~G~~~~v~~g~~~i~~ 285 (290)
T 3fve_A 228 GTGTVAAAVAALAAVGSPTGTLTVHVPGGEVVVTVT-DATSFLRGPSVLVARGDLADDW 285 (290)
T ss_dssp HHHHHHHHHHHHHHTTCSSEEEEEEETTEEEEEEEC-SSCEEEEEEEEEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEEEE-CCCEEEECCCEEEEEEEECHHH
T ss_conf 277999999999976998975999979987999997-9979999087999999999999
No 4
>>3ejx_A DAP epimerase, diaminopimelate epimerase, chloroplastic; PLP-independenet amino acid racemase, aziridino-diaminopimelate, isomerase; HET: ZDP; 1.95A {Arabidopsis thaliana} PDB: 3ekm_A* (A:)
Probab=100.00 E-value=6.7e-38 Score=269.32 Aligned_cols=279 Identities=34% Similarity=0.553 Sum_probs=222.0
Q ss_pred CCEEEEECCCCCCEEEEECCCC-CCCCCHHHHHHHC-CCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCHHH
Q ss_conf 4113785176773899947788-8788888998720-3567143558998258888866899997178762123320332
Q gi|254780710|r 5 MVDFAKMEGIGNKILVIDMRGC-HDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMR 82 (296)
Q Consensus 5 mi~F~Kmhg~GNDFiiiD~~~~-~~~~~~~~i~~~~-~~~giG~Dgli~i~~~~~~~~d~~m~~fN~DGS~A~mCGNG~R 82 (296)
++.|+|+|+.||.+.||+.... .........+.++ .+++.+.||++++.+. +..+|++|+|||+||+|+.|||||+|
T Consensus 26 ~~~f~~~~~~GNp~~VV~~~~~l~~~~~~~iA~~l~~~et~f~~~~~~~v~~~-~~~a~~~~~~~~~~g~e~~~CGh~ti 104 (317)
T 3ejx_A 26 VLHFVKYHGLGNDFILVDNRDSSEPKITQEQAAKLCDRNFGVGADGVIFAMPG-VNGTDYAMRIFNSDGSEPEMCGNGVR 104 (317)
T ss_dssp EEEEEEEEETTEEEEEEECTTCSSCSSCHHHHHHHTCTTTSSCCSEEEEEEEC-STTCSEEEEEEETTSCCCSCCHHHHH
T ss_pred EEEEEEECCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCC-CCCCCEEEEEECCCCCCCCCCCHHHH
T ss_conf 37899764599889999668887767999999986365678787659998778-88885899999599989886841199
Q ss_pred HHHHHHHCCC---CCCEEEEEECCCCEEEEECCCCEEEECCCCCCCCHHHCCCCCCCCCCCCCEEECCCCCCCEECCEEE
Q ss_conf 2311100135---7640379835883799985774277403687777776856565654344301105777740213099
Q gi|254780710|r 83 CVVRFLTSRM---KRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV 159 (296)
Q Consensus 83 c~a~yl~~~~---~~~~~~i~T~~g~~~~~~~~~~~v~V~mG~p~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (296)
|++++|.++. ....+.++|.+|++.++...++.+++.|..+...+...+......... ..+...............
T Consensus 105 a~a~~L~~~~~~~~~~~~~~~t~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ 183 (317)
T 3ejx_A 105 CFARFIAELENLQGKHSFTIHTGAGLIVPEIQDDGQVKVDMGTPILKAQDVPTKLSGNKGE-AVVEAELVVDGVSWNVTC 183 (317)
T ss_dssp HHHHHHHHHTTCCSCCBCCEEETTEEEEEEECTTSCEEEECCCCBCCGGGTTCCSCCSBTT-BCCSEEEEETTEEEEEEE
T ss_pred HHHHHHHHHCCCCCCCEEEEEECCCEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCHHH-HHCCCCEEECCCEEEEEE
T ss_conf 9999999858998896799996991799999579848982687776600386323430023-310442121685577999
Q ss_pred EECCCCEEEEECCCCCC-----HHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf 95587427974255768-----6888763100023323755551467997288728999804678766563235899999
Q gi|254780710|r 160 VSMGNPHAIFFVEDDLY-----HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 (296)
Q Consensus 160 v~iGNPH~Vi~v~d~i~-----~~~l~~~g~~i~~~~~Fp~gvNV~fv~v~~~~~I~iRt~ERGvGeTlACGTGA~Asa~ 234 (296)
+.+|+||+++++++... ..+...+++....+..+...++|.+.+..++..+..|+||+|.|.+.+||||++|+++
T Consensus 184 v~~g~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~R~f~pg~g~~ed~gTGsaa~~~ 263 (317)
T 3ejx_A 184 VSMGNPHCITFGKKGGPNLKVDDLNLPEIGPKFEHHEMFPARTNTEFVEVLSRSHLKMRVWERGAGATLACGTGACALVV 263 (317)
T ss_dssp EESSSEEEEESSBTTCCCCCGGGSCHHHHHHHHHTCTTCTTCCEEEEEEEEETTEEEEEEEBTTTBSCSCCHHHHHHHHH
T ss_pred EECCCCEEEEECCCHHHHCCCCHHHHHHHCHHHHHCCCCCCCEEEEEEEECCCCEEEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 99289589998452233228651238773613442101699529985054799979999878888986698778999999
Q ss_pred HHHHHCCCCCCEEEECCCCEEEEEEEC-CCEEEEEECEEEEEEEEEEECCCC
Q ss_conf 999817889807999079579999958-981999946289998899841320
Q gi|254780710|r 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGK 285 (296)
Q Consensus 235 ~~~~~~~~~~~v~V~~pGG~L~v~~~~-~~~i~l~Gpa~~vf~G~~~i~~~~ 285 (296)
+++..++.++...+..+||.+.+++.. +++|++.|+|..+++|++.|..-+
T Consensus 264 ~~~~~~~~~~~~~~~~~gG~~~v~v~~~~~~v~I~G~a~~v~~g~~~i~~~d 315 (317)
T 3ejx_A 264 AAVLEGRADRKCTVDLPGGPLEIEWKQEDNHIYMTGPAEAVFYGSALLHHHH 315 (317)
T ss_dssp HHHHTTSSCSEEEEEETTEEEEEEECTTTSCEEEEECCEEEEEEEEEC----
T ss_pred HHHHHCCCCCCEEEEECCCEEEEEEECCCCEEEEEEEEEEEEEEEEEEEECC
T ss_conf 9998676898679992893999999918997999942799999999998126
No 5
>>1tm0_A Proline racemase; structural genomics, alpha-beta protein THAT resembles double-beta barrel; 2.80A {Brucella melitensis 16M} (A:)
Probab=100.00 E-value=1.2e-38 Score=274.27 Aligned_cols=290 Identities=10% Similarity=0.029 Sum_probs=205.0
Q ss_pred CCCCEEEEECCCCCCEEEEECCCCC--CCCCHHHHHH------------HCCCCCCCCCEEEEEECCCCCCCCEEEEEEE
Q ss_conf 7541137851767738999477888--7888889987------------2035671435589982588888668999971
Q gi|254780710|r 3 SSMVDFAKMEGIGNKILVIDMRGCH--DNITSDAINA------------LSTDDNTHFDQIMLIHDFQDASVDAFIRIIN 68 (296)
Q Consensus 3 ~~mi~F~Kmhg~GNDFiiiD~~~~~--~~~~~~~i~~------------~~~~~giG~Dgli~i~~~~~~~~d~~m~~fN 68 (296)
+.++.|+|||++||+|.|++..... ..++.+..+. |.++.|+|+||++++. +.++.+|++|+|||
T Consensus 4 ~~~~~~vd~~~~GNp~~Vv~~~~~~~~~~l~~~~mq~iA~~~~~set~f~~p~~g~g~dg~~~v~-~~~~~ad~~ir~ft 82 (350)
T 1tm0_A 4 TKVIHIVGCHAEGEVGDVIVGGVAPPPGETVWEQSRFIANDETLRNFVLNKPRGGVFRHVNLLVP-PKDPRAQXGFIIXE 82 (350)
T ss_dssp SCCEEEEEEEETTEECEEEEESCCCCSSSSHHHHHHHHHHHCHHHHHHHSTTTSCSSCCEEEEEC-CCSSSCSEEEECCC
T ss_pred CCEEEEEECCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEC-CCCCCCCEEEEEEC
T ss_conf 63799997778988748996389899998999999998741379899744899887558999838-99988778999974
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCC------CCCEEEEEECCCCEEEEECCCCEEEECCCCCCCCHHHCCCCCCCCCCCCC
Q ss_conf 787621233203322311100135------76403798358837999857742774036877777768565656543443
Q gi|254780710|r 69 CDGSEVQSCGNGMRCVVRFLTSRM------KRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRD 142 (296)
Q Consensus 69 ~DGS~A~mCGNG~Rc~a~yl~~~~------~~~~~~i~T~~g~~~~~~~~~~~v~V~mG~p~~~~~~ip~~~~~~~~~~~ 142 (296)
+||+. .|||||+||+++||.+.. .++++.|+|.+|.+.++...++...+.+..|...+...|...........
T Consensus 83 p~gE~-~~CGh~ti~~a~~l~~~g~i~~~~~~~~~~~~t~~G~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (350)
T 1tm0_A 83 PADTP-PXSGSNSICVSTVLLDSGIIAXQEPVTHXVLEAPGGIIEVEAECRNGKAERISVRNVPSFADRLDAPLDVTGLG 161 (350)
T ss_dssp SSCCC-SCCHHHHHHHHHHHHHHTSSCCCSSEEEEEEECSSCEEEEEEEECSSSEEEEEEECCCBEECCCSEEEECSSSS
T ss_pred CCCCC-CCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEEEEECCCCEEEEEEECCCCHHHHCCCEEECCCCC
T ss_conf 67556-77665066575787664243578993599985798679999999599477999974145587589689868987
Q ss_pred EEECCCCCCCEECCEEEEECCCCEEEEECCC--CCCHHH---HHHHHHCCCCCCCCCCCCCEEEEEECCCC--------E
Q ss_conf 0110577774021309995587427974255--768688---87631000233237555514679972887--------2
Q gi|254780710|r 143 RFHIGPVNHLFLRNPFVVSMGNPHAIFFVED--DLYHYD---LASFGNLLAKHPMFSEGVNLSIARVTSLE--------S 209 (296)
Q Consensus 143 ~~~~~~~~~~~~~~~~~v~iGNPH~Vi~v~d--~i~~~~---l~~~g~~i~~~~~Fp~gvNV~fv~v~~~~--------~ 209 (296)
.......... .....++.|.+|+++.+.. .+.... +..+++.++.++.|++++|++|+.+.... .
T Consensus 162 ~~~~~~~~~~--~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~ 239 (350)
T 1tm0_A 162 TIXVDTAYGG--DSFVIVDAAQIGMKIEPGQARELAEIGVKITKAANEQLGFRHPERDWRHISFCQITEPVTREGDVLTG 239 (350)
T ss_dssp EEEEEEEESS--SEEEEEEGGGTC---CHHHHHHHHHHHHHHHCC------CCBTTBSCCSCCEEEEECCCEESSSEEEE
T ss_pred CEEEEEEECC--EEEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCCEE
T ss_conf 2798775165--48999700561774473149999999999999998636667999885549999965888788775202
Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC--EEEECC-CCEEEEEEECC--------CEEEEEECEEEEEEEE
Q ss_conf 899980467876656323589999999981788980--799907-95799999589--------8199994628999889
Q gi|254780710|r 210 LDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA--VSVKML-GGGLLIEWHDN--------NHVFMTGEAKKEWEGK 278 (296)
Q Consensus 210 I~iRt~ERGvGeTlACGTGA~Asa~~~~~~~~~~~~--v~V~~p-GG~L~v~~~~~--------~~i~l~Gpa~~vf~G~ 278 (296)
+++++||||++|+.|||||+||.+.++...++.... +.+.++ ||.+.+++..+ ..|.++|+|.++++|+
T Consensus 240 ~r~~~~~~Gv~Ed~atGSa~~ala~~l~~~g~~~~~~~~~q~s~~Gg~~~~~~~~~~~~~~~~~~~v~i~G~a~~v~~g~ 319 (350)
T 1tm0_A 240 VNTVAIRPAKFDRSPTGTGCSARXAVLHAKGQXKAGERFIGKSVLGTEFHCRLDKVLELGGKPAISPIISGRAWVTGTSQ 319 (350)
T ss_dssp CEEC----------CCHHHHHHHHHHHHHTTSCCTTCEEEECCC--CCEEEEEEEEEEETTEEEEEEEEEECEEEEEEEE
T ss_pred EEEEEECCCCEECCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEEEEEEEEECCCCEEEEEEEEEEEEEEEEE
T ss_conf 46798789976668860268999999997699779991999962388099999999888894869999999999999889
Q ss_pred EEECC-----------CCCCCCCCCCCCC
Q ss_conf 98413-----------2000148874469
Q gi|254780710|r 279 LDIKT-----------GKWIKKNEDDEAY 296 (296)
Q Consensus 279 ~~i~~-----------~~~~~~~~~~~~~ 296 (296)
+.|.. ..|++...++.||
T Consensus 320 ~~i~~~d~~~~g~~~~~~~~~~~~~~~~~ 348 (350)
T 1tm0_A 320 LXLDPSDPFPHGYRLSDTWPRDELEHHHH 348 (350)
T ss_dssp ECCCTTCSCSSCC----------------
T ss_pred EEECCCCCCCCCCEECCCCCCCCCCCCCC
T ss_conf 99769999989828637678543110125
No 6
>>1ym5_A YHI9, hypothetical 32.6 kDa protein in DAP2-SLT2 intergenic region; PHZF enzyme superfamily, double hot-DOG, structural genomics; 2.05A {Saccharomyces cerevisiae} (A:)
Probab=100.00 E-value=4.6e-39 Score=276.97 Aligned_cols=263 Identities=15% Similarity=0.185 Sum_probs=208.2
Q ss_pred EEEECCCCCCEEEEECCCCC-CCCCHHHHHHHCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 37851767738999477888-78888899872035671435589982588888668999971787621233203322311
Q gi|254780710|r 8 FAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVR 86 (296)
Q Consensus 8 F~Kmhg~GNDFiiiD~~~~~-~~~~~~~i~~~~~~~giG~Dgli~i~~~~~~~~d~~m~~fN~DGS~A~mCGNG~Rc~a~ 86 (296)
|+|||++||+|+||+....+ ..++....+.|+++.+.+.|++|+. +.+...|++|+|||+||+. .|||||+||+++
T Consensus 13 F~k~~~~GN~~~Vv~~~~~~~~~~~~~~~~~~ar~~~~~~~~fi~~--~~~~~~~~~~r~f~~~ge~-~~CGh~t~~~a~ 89 (300)
T 1ym5_A 13 FTEKPFMGNPVAVINFLEIDENEVSQEELQAIANWTNLSETTFLFK--PSDKKYDYKLRIFTPRSEL-PFAGHPTIGSCK 89 (300)
T ss_dssp TCSSTTSSEEEEEEECTTSCGGGSCHHHHHHHHHHHTSSCEEEEEC--CSSTTCSEEEEEECSSCEE-SCCHHHHHHHHH
T ss_pred CCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEC--CCCCCCCEEEEEECCCCCH-HHCCCCCHHEEE
T ss_conf 5599998857499973667867989999999999869987999956--8898864899996378762-003673032046
Q ss_pred HHHCCC---CCCEEEEEECCCCEEEEECCCCEEEECCCCCCCCHHHCCCCCCCCCCCCCEEECCCCCCCEECCEEEEECC
Q ss_conf 100135---76403798358837999857742774036877777768565656543443011057777402130999558
Q gi|254780710|r 87 FLTSRM---KRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG 163 (296)
Q Consensus 87 yl~~~~---~~~~~~i~T~~g~~~~~~~~~~~v~V~mG~p~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iG 163 (296)
||++.. ....+.++|.+|.+.+....+ .++|++..|.+.+...|........ ...........+++|
T Consensus 90 ~l~~~~~~~~~~~~~~~t~~g~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~g 159 (300)
T 1ym5_A 90 AFLEFTKNTTATSLVQECKIGAVPITINEG-LISFKAPMADYESISSEMIADYEKA---------IGLKFIKPPALLHTG 159 (300)
T ss_dssp HHHHHTTCSCCSEEEEEETTEEEEEEEETT-EEEEECSCCEEEECCHHHHHHHHHH---------HTSCCSSCCEEEESS
T ss_pred EEEEEEECCCCCEEEEEEECCEEEEEEEEC-CCCCCCCCCCCCCCCCHHHHHHHHH---------HHCCCCCCCEEEECC
T ss_conf 454443048873687863010014543101-1001245654445670332013444---------311357881999448
Q ss_pred CCEEEEECCCCCCH-----HHHHHHHHCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCC--CCCCCHHHHHHHHHHH
Q ss_conf 74279742557686-----8887631000233237555514679972887289998046787--6656323589999999
Q gi|254780710|r 164 NPHAIFFVEDDLYH-----YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG--LTAACGSAACASVVAS 236 (296)
Q Consensus 164 NPH~Vi~v~d~i~~-----~~l~~~g~~i~~~~~Fp~gvNV~fv~v~~~~~I~iRt~ERGvG--eTlACGTGA~Asa~~~ 236 (296)
+||+++++. +.+. .+++.+....+.+..++..+|+.|....++..+.+|+|+++.| ||.|||||+||.+++.
T Consensus 160 ~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~f~~~~G~~Ed~atGS~~~ala~~l 238 (300)
T 1ym5_A 160 PEWIVALVE-DAETCFNANPNFAMLAHQTKQNDHVGIILAGPKKEAAIKNSYEMRAFAPVINVYEDPVCGSGSVALARYL 238 (300)
T ss_dssp SEEEEEECS-CHHHHHHCCCCHHHHHHHHHHHTCCEEEEEEECTTCSSTTEEEEEEEEGGGTEEEESSCHHHHHHHHHHH
T ss_pred CCEEEEEEC-CHHHHHHHCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHH
T ss_conf 997999936-6687300014633422333125765248876520368760799998875055544723231378899999
Q ss_pred HHHCCCCCCE--EEE-----CCCCEEEEEEECCC----EEEEEECEEEEEEEEEEECCC
Q ss_conf 9817889807--999-----07957999995898----199994628999889984132
Q gi|254780710|r 237 GCLHKTNRAV--SVK-----MLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDIKTG 284 (296)
Q Consensus 237 ~~~~~~~~~v--~V~-----~pGG~L~v~~~~~~----~i~l~Gpa~~vf~G~~~i~~~ 284 (296)
.+.++.+... .+. .+||.|.++|..++ +|+++|+|.++++|+++|..-
T Consensus 239 ~~~~~~~~~~~~~~~qg~~~~~~g~i~v~~~~~~~~~~~v~i~G~a~~v~~g~~~l~~~ 297 (300)
T 1ym5_A 239 QEVYKFEKTTDITISEGGRLKRNGLMLASIKKEADNSTSYYIAGHATTVIDGKIKVHHH 297 (300)
T ss_dssp HHHHCCSSCEEEEEEECGGGTCCEEEEEEEEECTTSCEEEEEEECEEEEEEEEEEEC--
T ss_pred HHHCCCCCCEEEEEECCCCCCCCEEEEEEEEECCCCCCEEEEEEEEEEEEEEEEEEEEE
T ss_conf 98359998579999805313898599999997689863699991599999999999861
No 7
>>1qya_A ORFB, hypothetical protein YDDE; putative phenazine biosynthesis protein, epimerase, antibiotic biosynthesis protein, structural genomics; 2.00A {Escherichia coli} (A:)
Probab=100.00 E-value=3.8e-38 Score=270.95 Aligned_cols=263 Identities=12% Similarity=0.026 Sum_probs=191.8
Q ss_pred EEEECCCCCCEEEEECCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHH
Q ss_conf 37851767738999477888788888998720356714355899825888886689999717876212332033223111
Q gi|254780710|r 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF 87 (296)
Q Consensus 8 F~Kmhg~GNDFiiiD~~~~~~~~~~~~i~~~~~~~giG~Dgli~i~~~~~~~~d~~m~~fN~DGS~A~mCGNG~Rc~a~y 87 (296)
|+|||+.||+|+|++... .++.+..+.+ .+++++++.+|+.++. ..|+.+++||++|+. .|||||+||+++|
T Consensus 21 F~~~~~~GN~~~Vv~~~~---~~~~~~~~~~--a~~~~~~~t~fv~~~~--~~~~~~r~f~~~ge~-~~CGh~t~~~a~~ 92 (307)
T 1qya_A 21 FTSQPFRGNSAGVVFPAD---NLSEAQMQLI--ARELGHSETAFLLHSD--DSDVRIRYFTPTVEV-PICGHATVAAHYV 92 (307)
T ss_dssp TCSSTTCSEEEEEEECCT---TCCHHHHHHH--HHHHCCSCEEEEECCS--SSSEEEEEECSSSEE-CC--CHHHHHHHH
T ss_pred CCCCCCCCCCEEEEECCC---CCCHHHHHHH--HHHHCCCEEEEEECCC--CCCEEEEEECCCCHH-HCCCCHHHHHHHH
T ss_conf 879999876439998898---9899999999--9986996699997688--884699996787433-2256508999999
Q ss_pred HHCC--CCCCEEEEEECCCCEEEEECCCCEEEECCCCCCCCHHHCCCCCCCCCCCCCEEECCCCCCCEECCEEEEECCCC
Q ss_conf 0013--57640379835883799985774277403687777776856565654344301105777740213099955874
Q gi|254780710|r 88 LTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNP 165 (296)
Q Consensus 88 l~~~--~~~~~~~i~T~~g~~~~~~~~~~~v~V~mG~p~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iGNP 165 (296)
|.++ ..++++.++|.+|.+.++...++...+.+..+...+...|............+.+............++++|+|
T Consensus 93 l~~~~~~~~~~~~~~t~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~ 172 (307)
T 1qya_A 93 RAKVLGLGNCTIWQTSLAGKHRVTIEKHNDDYRISLEQGTPGFEPPLEGETRAAIINALHLTEDDILPGLPIQVATTGHS 172 (307)
T ss_dssp HHHHHTCCSEEEEEECC--CEEEEEEEETTEEEEEEECCCCEECCCBCTHHHHHHHHHTTCCGGGBCTTCCBEEEESSSC
T ss_pred HHHHCCCCCCEEEEEECCCCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCHHHHHHHCCCCHHHHCCCCCEEEEEECCC
T ss_conf 99734757760688750574267664058723677425775447863221034554430467667314777089980670
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEC----CCCEEEEEECCCCCC--CCCCCHHHHHHHHHHHHHH
Q ss_conf 2797425576868887631000233237555514679972----887289998046787--6656323589999999981
Q gi|254780710|r 166 HAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVT----SLESLDLRTWERGVG--LTAACGSAACASVVASGCL 239 (296)
Q Consensus 166 H~Vi~v~d~i~~~~l~~~g~~i~~~~~Fp~gvNV~fv~v~----~~~~I~iRt~ERGvG--eTlACGTGA~Asa~~~~~~ 239 (296)
|+|+++. + ...+..+++.++.++.|++++|+.++.+. +++.++.|+||||+| |+.|||||+||.+++..+.
T Consensus 173 ~~iv~v~-~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~f~~~~G~~Ed~atGsa~~ala~~l~~~ 249 (307)
T 1qya_A 173 KVMIPLK-P--EVDIDALSPDLNALTAISKKIGCNGFFPFQIRPGKNETDGRMFSPAIGIVEDPVTGNANGPMGAWLVHH 249 (307)
T ss_dssp EEEEEBC-T--TSCGGGCCCCHHHHHHHHHHHTCCCEEEEEECTTSSEEEECEEEGGGTEEEESSCHHHHHHHHHHHHHT
T ss_pred EEEEEEC-C--HHHHHHCCCCHHHHHHCCCCCCCCEEEEEECCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 5899956-9--899865073367787513237831699774057786489998525576676766068799999999972
Q ss_pred CCCCCCEEEE----------CCCCEEEEEEECCC----EEEEEECEEEEEEEEEEE
Q ss_conf 7889807999----------07957999995898----199994628999889984
Q gi|254780710|r 240 HKTNRAVSVK----------MLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDI 281 (296)
Q Consensus 240 ~~~~~~v~V~----------~pGG~L~v~~~~~~----~i~l~Gpa~~vf~G~~~i 281 (296)
+..+....+. .+||.|.++|..++ .|+++|+|.++++|++.|
T Consensus 250 ~~~~~~~~~~~~~~~qg~~~~rgg~i~v~~~~~~~~~~~v~i~G~a~~v~~G~~~i 305 (307)
T 1qya_A 250 NVLPHDGNVLRVKGHQGRALGRDGMIEVTVTIRDNQPEKVTISGTAVILFHAEWAI 305 (307)
T ss_dssp TCSCCCSSEEEEEEEECGGGTCCEEEEEEEEEETTEEEEEEEEECEEEEEEEECSS
T ss_pred CCCCCCCCEEEEEEEEEEEECCCEEEEEEEEECCCCCCEEEEEEEEEEEEEEEEEE
T ss_conf 76766775478999886785798599999995699988799981399999999998
No 8
>>1s7j_A Phenazine biosynthesis protein PHZF family; bacteria, structural genomics, PSI, protein structure initiative; 2.30A {Enterococcus faecalis V583} (A:)
Probab=100.00 E-value=4.8e-36 Score=257.09 Aligned_cols=245 Identities=15% Similarity=0.121 Sum_probs=201.4
Q ss_pred EEEECCCCCCEEEEECCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHH
Q ss_conf 37851767738999477888788888998720356714355899825888886689999717876212332033223111
Q gi|254780710|r 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF 87 (296)
Q Consensus 8 F~Kmhg~GNDFiiiD~~~~~~~~~~~~i~~~~~~~giG~Dgli~i~~~~~~~~d~~m~~fN~DGS~A~mCGNG~Rc~a~y 87 (296)
|+|||+.||+|+|++.. ..++..+.+.++++.+.. +..|+.++ .+|++|+|||+||+. .|||||+||+++|
T Consensus 11 F~~~~~~GN~~~Vv~~~---~~l~~~~~~~ia~~~~~~--~t~fv~~~---~~~~~vr~f~~~ge~-~~CGh~t~a~a~~ 81 (262)
T 1s7j_A 11 FAEEVFKGNPAAVYVLE---KWLPEAVMQNIAIENNLS--ETAFTVKE---GQSYALRWFTPEREI-DLCGHATLATAFV 81 (262)
T ss_dssp TCSSTTSSEEEEEEECS---SCCCHHHHHHHHHHHCCS--CEEEEEEE---TTEEEEEEECSSSEE-SCCHHHHHHHHHH
T ss_pred CCCCCCCCCEEEEEECC---CCCCHHHHHHHHHHHCCC--CEEEECCC---CCCEEEEEEECCCCE-EEECCCHHHHHHH
T ss_conf 76999997335999899---898999999999986999--54998666---674035898525646-6606752888999
Q ss_pred HHCC--CCCCEEEEEECCCCEEEEECCCCEEEECCCCCCCCHHHCCCCCCCCCCCCCEEECCCCCCCEECCEEEEECCCC
Q ss_conf 0013--57640379835883799985774277403687777776856565654344301105777740213099955874
Q gi|254780710|r 88 LTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNP 165 (296)
Q Consensus 88 l~~~--~~~~~~~i~T~~g~~~~~~~~~~~v~V~mG~p~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iGNP 165 (296)
|.+. ....++.++|.+|.+.++..+++.+.+.|..|......++.... .....+..+++|+|
T Consensus 82 l~~~g~~~~~~~~i~t~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~v~~G~~ 145 (262)
T 1s7j_A 82 LFNYYSVAEETLHFTSQSGPLAVTKKEEYYYLDFPYILPERIPILPEYEA----------------ALGTKIYEAYLGRD 145 (262)
T ss_dssp HHHHSCCCSSEEEEEETTEEEEEEEETTEEEEEEECCCCEECCCCHHHHH----------------HHTSCCSEEEESSS
T ss_pred HHHHCCCCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHH----------------HCCCCEEEEECCCC
T ss_conf 99736767651489961232012212454411124557312466166665----------------31555079971776
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCC--CCCCCHHHHHHHHHHHHHHCCC-
Q ss_conf 2797425576868887631000233237555514679972887289998046787--6656323589999999981788-
Q gi|254780710|r 166 HAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG--LTAACGSAACASVVASGCLHKT- 242 (296)
Q Consensus 166 H~Vi~v~d~i~~~~l~~~g~~i~~~~~Fp~gvNV~fv~v~~~~~I~iRt~ERGvG--eTlACGTGA~Asa~~~~~~~~~- 242 (296)
|+|+.+. ..++..+++.++.++.||+++|+.|+...+++.++.|+|++|.| |+.|||||++|.+.+....+..
T Consensus 146 ~~v~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~f~~~~g~~Ed~atGs~~~ala~~l~~~~~~~ 221 (262)
T 1s7j_A 146 LFFVLKD----EETVAKITPDFSALKALDLGVGVIVTASGDSVDFVSRTFFPKLRINEDPVCGSAHANLIPYWGKRLNQT 221 (262)
T ss_dssp EEEECSC----HHHHHHCCCCHHHHHHCSSCSSEEEEEECSSSSEEEEEEEGGGTEEEESCCSTTHHHHHHHHHHHHTCS
T ss_pred CCEECCC----HHHHHHCCCCHHHHHHCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 3155168----788864487767786357766999932699744699986044457621231567888999997506982
Q ss_pred -CCCEEEECCCCEEEEEEECCCEEEEEECEEEEEEEEEEEC
Q ss_conf -9807999079579999958981999946289998899841
Q gi|254780710|r 243 -NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 (296)
Q Consensus 243 -~~~v~V~~pGG~L~v~~~~~~~i~l~Gpa~~vf~G~~~i~ 282 (296)
.+...+..+||.|.+++. +++|+++|+|.++++|++.|.
T Consensus 222 ~~~q~~~~~~gg~l~v~~~-~~~v~i~G~a~~~~~g~~~i~ 261 (262)
T 1s7j_A 222 TLSAYQVSPRGGFLTCEVK-ENRVIIGGTAKLFAKGEAYLP 261 (262)
T ss_dssp EEEEEECSSSCCEEEEEEE-TTEEEEEECEEEEEEEEEEC-
T ss_pred EEEEEEEECCCCEEEEEEE-CCEEEEEEEEEEEEEEEEECC
T ss_conf 5999999579938999998-998999719999999999806
No 9
>>2azp_A Hypothetical protein PA1268; PA1268,APC5861,sulfur SAD, structural genomics, PSI, protein structure initiative; 2.13A {Pseudomonas aeruginosa} (A:)
Probab=100.00 E-value=2.3e-36 Score=259.14 Aligned_cols=272 Identities=13% Similarity=0.004 Sum_probs=203.8
Q ss_pred CCEEEEECCCCCCEEEEECCCCC--CCCCHHHHH------------HHCC-CCCCCCCEEEEEECCCCCCCCEEEEEEEC
Q ss_conf 41137851767738999477888--788888998------------7203-56714355899825888886689999717
Q gi|254780710|r 5 MVDFAKMEGIGNKILVIDMRGCH--DNITSDAIN------------ALST-DDNTHFDQIMLIHDFQDASVDAFIRIINC 69 (296)
Q Consensus 5 mi~F~Kmhg~GNDFiiiD~~~~~--~~~~~~~i~------------~~~~-~~giG~Dgli~i~~~~~~~~d~~m~~fN~ 69 (296)
++.|+|||+.||+|.||+..... ..++.+..+ .++. +.++|+||++++. ++++.+|++|+|||+
T Consensus 5 v~~F~~~~~~GNp~~VV~~~~~~~~~~~~~~~~~~ia~e~~~~~t~fi~~~~~~~~~e~~~v~~-~~~~~a~~~ir~f~p 83 (318)
T 2azp_A 5 RIRIIDSHTGGEPTRLVIGGFPDLGQGDMAERRRLLGERHDAWRAACILEPRGSDVLVGALLCA-PVDPEACAGVIFFNN 83 (318)
T ss_dssp EEEEEEEEETTEEEEEEEECSCCCCSSCHHHHHHHHHHHCHHHHHHHHSTTTSCTTCEEEEEEC-CSSTTSSEEEEEECS
T ss_pred EEEEEEECCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCHHHHHHEECCCCCCCCEEEEEEC-CCCCCCCEEEEEECC
T ss_conf 9999970689976689973987899989999999998741457686402776766540016503-578788579999658
Q ss_pred CCCCCCCCCCHHHHHHHHHHCC--CCCCEEEEEECCCCEEEEECCCCEEEECCCCCCCCHHHCCCCCCCCCCCCCEEECC
Q ss_conf 8762123320332231110013--57640379835883799985774277403687777776856565654344301105
Q gi|254780710|r 70 DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIG 147 (296)
Q Consensus 70 DGS~A~mCGNG~Rc~a~yl~~~--~~~~~~~i~T~~g~~~~~~~~~~~v~V~mG~p~~~~~~ip~~~~~~~~~~~~~~~~ 147 (296)
||.. .|||||+||+++||.+. .....+.++|.+|.+.++..+++.+.+.+..+.+.+...+........... ..
T Consensus 84 ~gE~-~~CGh~tla~a~~l~~~~~~~~~~~~i~t~~g~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-- 159 (318)
T 2azp_A 84 SGYL-GMCGHGTIGLVASLAHLGRIGPGVHRIETPVGEVEATLHEDGSVSVRNVPAYRYRRQVSVEVPGIGRVSG-DI-- 159 (318)
T ss_dssp SSBC-SCCHHHHHHHHHHHHHTTSCCSEEEEEECTTCCEEEEECTTSCEEEECSCBEEEEEEEEEEETTTEEEEE-EE--
T ss_pred CCCC-CCCCCCCEEEEEEHHHCCCCCCCEEEEEECCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEE-EE--
T ss_conf 8744-3101241236760414498202269998068301589997310100257861112476543323354122-10--
Q ss_pred CCCCCEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECCC---CEEEEEE-CCCCCCCCC
Q ss_conf 777740213099955874279742557686888763100023323755551467997288---7289998-046787665
Q gi|254780710|r 148 PVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL---ESLDLRT-WERGVGLTA 223 (296)
Q Consensus 148 ~~~~~~~~~~~~v~iGNPH~Vi~v~d~i~~~~l~~~g~~i~~~~~Fp~gvNV~fv~v~~~---~~I~iRt-~ERGvGeTl 223 (296)
..........++.|+||++++++ +.+...+...++.++.++.|++++|+.++++.++ ..+..|+ +++|++|+.
T Consensus 160 --~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~g~~Ed~ 236 (318)
T 2azp_A 160 --AWGGNWFFLVAGHGQRLAGDNLD-ALTAYTVAVQQALDDQDIRGEDGGAIDHIELFADDPHADSRNFVLCPGKAYDRS 236 (318)
T ss_dssp --EESSSEEEEEESCCCCCSTTCHH-HHHHHHHHHHHHHHHTTCBCTTSCBCCEEEEEEEETTEEEEEEEECTTSCBCSS
T ss_pred --CCCCCEEEEEEECCCCCCCCCHH-HHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCEEEEEEECCCEEECC
T ss_conf --26885169997046533343378-997642434556665302378765066888504478872899999789804147
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCEEEE---CCCCEEEEEEECCC-------------EEEEEECEEEEEEEEEEECCC
Q ss_conf 63235899999999817889807999---07957999995898-------------199994628999889984132
Q gi|254780710|r 224 ACGSAACASVVASGCLHKTNRAVSVK---MLGGGLLIEWHDNN-------------HVFMTGEAKKEWEGKLDIKTG 284 (296)
Q Consensus 224 ACGTGA~Asa~~~~~~~~~~~~v~V~---~pGG~L~v~~~~~~-------------~i~l~Gpa~~vf~G~~~i~~~ 284 (296)
|||||+||.++.+...++....+++. .+||.+.++|+.+. +++++|+++++++|++.|..+
T Consensus 237 atGSa~~a~~a~l~~~~~~~~~~~i~Qgs~~G~~~~i~v~~~~~~~~g~~~~~i~G~v~i~g~~~~~~~g~~~~~~g 313 (318)
T 2azp_A 237 PCGTGTSAKLACLAADGKLLPGQPWRQASVIGSQFEGRYEWLDGQPGGPIVPTIRGRAHVSAEATLLLADDDPFAWG 313 (318)
T ss_dssp CCHHHHHHHHHHHHHTTSSCTTCCEEEECTTSCEEEEEEEEGGGCTTSCEEEEEEECEEEEEEEEEEECTTCTTTTC
T ss_pred CCCCCCCHHEEHHHHCCCCCCCCEEEEEEECCCCEEEEEEEEEECCCCEEEEEEEEEEEEEEEEEEEECCCCCCCCC
T ss_conf 60255400124543307868998799997428847999999994589769999967999998789997999998577
No 10
>>1u0k_A Gene product PA4716; sctructural genomics, MCSG, protein structure initiative, structural genomics, PSI; 1.50A {Pseudomonas aeruginosa PAO1} (A:)
Probab=100.00 E-value=7e-35 Score=249.39 Aligned_cols=264 Identities=16% Similarity=0.097 Sum_probs=203.0
Q ss_pred EEEECCCCCCEEEEECCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHH
Q ss_conf 37851767738999477888788888998720356714355899825888886689999717876212332033223111
Q gi|254780710|r 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF 87 (296)
Q Consensus 8 F~Kmhg~GNDFiiiD~~~~~~~~~~~~i~~~~~~~giG~Dgli~i~~~~~~~~d~~m~~fN~DGS~A~mCGNG~Rc~a~y 87 (296)
|+|||+.||+|.|++.. ..++.++.+.++++.+. ...+||.++. ..++++.+||+||+|+.|||||+||+++|
T Consensus 13 F~~~~~~GNp~~Vv~~~---~~l~~~~~~~iA~~~~~--~~t~fi~~~~--~~~~~~~~~~~~~~e~~~CGh~t~~~a~~ 85 (288)
T 1u0k_A 13 FAERPLTGNGLAVFDDA---SALDDAAXQAWTRELRQ--FESIFLLPGD--DPRAFRARIFTLEEELPFAGHPLLGAAAL 85 (288)
T ss_dssp SCSSTTCSEEEEEESCC---TTCCHHHHHHHHHHHCC--SEEEEEEECS--CTTEEEEEEEESSCBCCSCCTHHHHHHHH
T ss_pred CCCCCCCCCCEEEEECC---CCCCHHHHHHHHHHHCC--CEEEEEECCC--CCCEEEEEEEECCCCHHCCCCCHHHHHHH
T ss_conf 65999988756999889---99699999999998699--8699996367--89879999961788611046642235653
Q ss_pred HHCC---CCCCEEEEEECCCCEEEEECCCCEEEECCCCCCCCHHHCCCCCCCCCCCCCEEECCCCCCCEECCEEEEECCC
Q ss_conf 0013---5764037983588379998577427740368777777685656565434430110577774021309995587
Q gi|254780710|r 88 LTSR---MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 (296)
Q Consensus 88 l~~~---~~~~~~~i~T~~g~~~~~~~~~~~v~V~mG~p~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iGN 164 (296)
|.++ .+...+.++|.+|++.++...++.+...+..|.......+.............. .............+..++
T Consensus 86 l~~~g~~~~~~~~~~~t~~G~~~v~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 164 (288)
T 1u0k_A 86 LHHLRGGDNEQHWTLHLASKSVALRSVRAGSGFYAEXDQGRAEFGATPDAGTCRWFAEAFS-LSANDLSGHPPRVVSTGL 164 (288)
T ss_dssp HHHHHCCSSCEEEEEECSSCEEEEEEEEETTEEEEEEEEEECEECCCCCHHHHHHHHHHTT-CCGGGBCSSCCEEEESSS
T ss_pred HHHHCCCCCCCEEEEEECCCCEEEEEEECCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHC-CCHHHCCCCCCEEEECCC
T ss_conf 3111024677169999537640688850476125531478884354122332667643200-001112587809997799
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCEEEEEECCC-CCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 42797425576868887631000233237555514679972887289998046-78766563235899999999817889
Q gi|254780710|r 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER-GVGLTAACGSAACASVVASGCLHKTN 243 (296)
Q Consensus 165 PH~Vi~v~d~i~~~~l~~~g~~i~~~~~Fp~gvNV~fv~v~~~~~I~iRt~ER-GvGeTlACGTGA~Asa~~~~~~~~~~ 243 (296)
+|+++..+ ..+..+.+.++.+..||.+.||.++...+++....++++| |++|+.|||||+||.++++...+..+
T Consensus 165 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~r~~~~~~g~~Ed~atGSa~~ala~~l~~~g~~~ 239 (288)
T 1u0k_A 165 PYLLLPVT-----AEALGRARQVNDLQEALDKLGAAFVYLLDVDGREGRTWDNLGLVEDVATGSAAGPVAAYLVEYGLAA 239 (288)
T ss_dssp CEEEEEBC-----HHHHHTCCCCSCCHHHHHHHTCSEEEEEETTTTEEECBCTTSCSBCSCCHHHHHHHHHHHHHTTSSC
T ss_pred CEEEEEEC-----HHHHHHCCCHHHHHHHHHCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 77999814-----1665635675888864313767999983256556510378775566466403899999999707878
Q ss_pred C--CEEEEC-----CCCEEEEEEECCCEEEEEECEEEEEEEEEEECCC
Q ss_conf 8--079990-----7957999995898199994628999889984132
Q gi|254780710|r 244 R--AVSVKM-----LGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284 (296)
Q Consensus 244 ~--~v~V~~-----pGG~L~v~~~~~~~i~l~Gpa~~vf~G~~~i~~~ 284 (296)
. .+.+++ ++|.|.+++++++.|+++|+|..+++|++.|...
T Consensus 240 ~~~~~~~~qg~~~~~~g~i~v~~~~~~~v~i~G~a~~~~~g~~~i~~~ 287 (288)
T 1u0k_A 240 RGEPFVLHQGRFLERPSRLDVQVATDGSVRVGGHVQLLARAELLTSAG 287 (288)
T ss_dssp TTSCEEEEECGGGTCCEEEEEEECSSSEEEEEEEEEEEEEEEECSCC-
T ss_pred CCCEEEEECCCCCCCCEEEEEEECCCCCEEEEEEEEEEEEEEEEEECC
T ss_conf 884899982550289869999993899399998999999999995379
No 11
>>3edn_A Phenazine biosynthesis protein, PHZF family; diaminopimelate epimerase-like fold, alpha and beta protein class, structural genomics; HET: MSE; 1.50A {Bacillus anthracis} (A:)
Probab=100.00 E-value=8.2e-35 Score=248.95 Aligned_cols=259 Identities=15% Similarity=0.071 Sum_probs=185.9
Q ss_pred EEEEECCCCCCEEEEECCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 13785176773899947788878888899872035671435589982588888668999971787621233203322311
Q gi|254780710|r 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVR 86 (296)
Q Consensus 7 ~F~Kmhg~GNDFiiiD~~~~~~~~~~~~i~~~~~~~giG~Dgli~i~~~~~~~~d~~m~~fN~DGS~A~mCGNG~Rc~a~ 86 (296)
-|+|||+.||+|+|+|.. ..++....+.++++ +++|+++|+.++.. +|+ +..|+.||+|+.|||||+||+|+
T Consensus 11 ~F~~~~~~GN~~~Vv~~~---~~~~~~~~~~ia~~--~~~~~t~fv~~~~~--~~~-~~~~~~~g~e~~~CGh~t~~~a~ 82 (299)
T 3edn_A 11 AFTNKPNXGNPAGIVLDA---DGLTEEEXQRIAEK--VGFNETSFVLSSEV--ADI-RXRYFTPGYEXDLCGHGTVGTIY 82 (299)
T ss_dssp ESCSSTTSSEEEEEESCC---TTCCHHHHHHHHHH--HCSSCEEEEECCSS--SSE-EEEEECSSCEESCCHHHHHHHHH
T ss_pred ECCCCCCCCCCEEEEECC---CCCCHHHHHHHHHH--HCCCEEEEEECCCC--CCE-EEEEEECCCCHHHCCCCCCHHHH
T ss_conf 766999988756999889---99899999999998--59988999964788--847-99998446742003776123588
Q ss_pred HHHCCC---CCCEEEEEECCCCEEEEECCCCEE--EEC--CCCCCCCHHHCCCCCCCCCCCCCEEECCCCCCCEECCEEE
Q ss_conf 100135---764037983588379998577427--740--3687777776856565654344301105777740213099
Q gi|254780710|r 87 FLTSRM---KRKSFTFETIRGILVAKENRDGSI--SVD--MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV 159 (296)
Q Consensus 87 yl~~~~---~~~~~~i~T~~g~~~~~~~~~~~v--~V~--mG~p~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (296)
||.++. ....+.++|.+|.+.++...++.. ++. +..|.+.....+........ ...... ......+..
T Consensus 83 ~l~~~~~~~~~~~~~~~t~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~ 157 (299)
T 3edn_A 83 ALRERGLLEEKASLTIETKAGILPIQIGVNENGETFIKXRQTAPQFKDFAGSKEELAHSI---GLEVND--LDVSLPIVY 157 (299)
T ss_dssp HHHHTTCSCSCSEEEEEETTEEEEEEEEECTTSCEEEEEECCCCEEEECCSCHHHHHHHT---TCCGGG--BCTTSCCEE
T ss_pred HHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHH---CCCCHH--CCCCEEEEE
T ss_conf 898725567784488996166313467622686068874167654331111102334432---132000--366403899
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCC---------EEEEEECCCCCCCCCCCHHHHH
Q ss_conf 9558742797425576868887631000233237555514679972887---------2899980467876656323589
Q gi|254780710|r 160 VSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLE---------SLDLRTWERGVGLTAACGSAAC 230 (296)
Q Consensus 160 v~iGNPH~Vi~v~d~i~~~~l~~~g~~i~~~~~Fp~gvNV~fv~v~~~~---------~I~iRt~ERGvGeTlACGTGA~ 230 (296)
+++|+||+|++++ +...+..+++.++....++...|+.++.+.... ..+.+.++||++|+.|||||+|
T Consensus 158 ~~~g~~~~vv~v~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~Ed~acGSg~~ 234 (299)
T 3edn_A 158 GSTGNWTVIVPVK---NLDVCERXKPNNEVFPSVLKEIPNASIHPICLETYDEKVHXHGRHFSSAYAGTIEDPVTGTASG 234 (299)
T ss_dssp EESSSEEEEEEBS---CHHHHHHCCCCGGGHHHHCSSSTTCEEEEEESCCSSTTCSEEECEECCTTSSCSEESSCHHHHH
T ss_pred EECCCEEEEEEEC---CHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEECCCCCCCEECCCCCCCCHH
T ss_conf 9568405887403---3345543120167888877525765236754205787752255550212564031426763020
Q ss_pred HHHHHHHHHCCCCCC----EE-----EECCCCEEEEEEECC-----CEEEEEECEEEEEEEEEEE
Q ss_conf 999999981788980----79-----990795799999589-----8199994628999889984
Q gi|254780710|r 231 ASVVASGCLHKTNRA----VS-----VKMLGGGLLIEWHDN-----NHVFMTGEAKKEWEGKLDI 281 (296)
Q Consensus 231 Asa~~~~~~~~~~~~----v~-----V~~pGG~L~v~~~~~-----~~i~l~Gpa~~vf~G~~~i 281 (296)
|.+.++...+..+.. +. +..+||.|.++|..+ ..++++|+|..+++|++.|
T Consensus 235 al~~~l~~~~~~~~~~~~~~~~~qg~~~~~gg~i~v~~~~~~~~~~~~v~i~G~a~~v~~G~~~i 299 (299)
T 3edn_A 235 VXGAYYATYVEKDFDHEXELIVEQGQEIHKDGRVTVYVTKDVESEKLQIDIAGTAVYVKEFEVLI 299 (299)
T ss_dssp HHHHHHHHHTCCCCSSEEEEEEEECGGGTCCEEEEEEEECCTTCSSCEEEEEECEEEEEEEEEEC
T ss_pred HHHHHHHHHCCCCCCCCEEEEEECCEEECCCCEEEEEEEECCCCCCCEEEEEEEEEEEEEEEEEC
T ss_conf 18999997618776640799997851868993899999863678856699983699999999989
No 12
>>1w61_A B-cell mitogen; racemase, racemase pyridoxal phosphate-independent, stereo inversion, acid/base catalysis, homodimer, alpha/beta domains; 2.1A {Trypanosoma cruzi} PDB: 1w62_A (A:)
Probab=100.00 E-value=4.5e-30 Score=217.68 Aligned_cols=274 Identities=12% Similarity=0.047 Sum_probs=197.6
Q ss_pred CCCCEEEEECCCCCCEEEEECCCC--CCCCCHHH------------HHHHCC-CCCCCCCEEEEEECCCCCCCCEEEEEE
Q ss_conf 754113785176773899947788--87888889------------987203-567143558998258888866899997
Q gi|254780710|r 3 SSMVDFAKMEGIGNKILVIDMRGC--HDNITSDA------------INALST-DDNTHFDQIMLIHDFQDASVDAFIRII 67 (296)
Q Consensus 3 ~~mi~F~Kmhg~GNDFiiiD~~~~--~~~~~~~~------------i~~~~~-~~giG~Dgli~i~~~~~~~~d~~m~~f 67 (296)
+..+.|+|||+.||+|.|+..... ...++.+. ...++. |.+.|.||.+++ ++.++.+|+.|+||
T Consensus 43 ~~~~~~vd~~~~GNp~~Vv~~~~~~~~~~~~~~~mq~ia~e~~~~~t~f~~~pr~~~g~~g~iv~-~~~~~~ad~~~r~f 121 (414)
T 1w61_A 43 KKSFTCIDMHTEGEAARIVTSGLPHIPGSNMAEKKAYLQENMDYLRRGIMLEPRGHDDMFGAFLF-DPIEEGADLGIVFM 121 (414)
T ss_dssp CEEEEEEEEEETTEEEEEEEECCCCCCCSSHHHHHHHHHHHCHHHHHHHHSBTTSCTTCEEEEEE-CCCSTTCSEEEEEE
T ss_pred CCEEEEEECCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE-CCCCCCCCEEEEEE
T ss_conf 34078996668987747997587899999999999999862689999975689988761678960-79998888899998
Q ss_pred ECCCCCCCCCCCHHHHHHHHHHCCC--------CCCEEEEEECCCCEEEEECCCCEEEECCCCCCCCHHHCCCCCCCCCC
Q ss_conf 1787621233203322311100135--------76403798358837999857742774036877777768565656543
Q gi|254780710|r 68 NCDGSEVQSCGNGMRCVVRFLTSRM--------KRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKM 139 (296)
Q Consensus 68 N~DGS~A~mCGNG~Rc~a~yl~~~~--------~~~~~~i~T~~g~~~~~~~~~~~v~V~mG~p~~~~~~ip~~~~~~~~ 139 (296)
|+||+. .|||||++|+++||.+.. .+..+.++|.+|++.++...++...+.++.+.+.....+.
T Consensus 122 tp~ge~-~~CGh~tia~a~~l~e~g~v~~~~~~~~~~i~~~t~~G~v~v~v~~~~~~~~~~~~~~~~~v~~~~------- 193 (414)
T 1w61_A 122 DTGGYL-NMCGHNSIAAVTAAVETGIVSVPAKATNVPVVLDTPAGLVRGTAHLQSGTESEVSNASIINVPSFL------- 193 (414)
T ss_dssp ESSCCC-SCCHHHHHHHHHHHHHTTSSCCCTTCSEEEEEEEETTEEEEEEEEECTTCSSCEEEEEEECSCBEE-------
T ss_pred CCCCCC-CCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCCCCCEEEEEECCHHH-------
T ss_conf 078766-654541899999999726345788876403899658744999999957843654149999641468-------
Q ss_pred CCCEEECCCCCCCEECCEEEEECCCCEEEEECCC------CCCHHHHHHHHHCCC---------CCCCCCCCCCEEEEEE
Q ss_conf 4430110577774021309995587427974255------768688876310002---------3323755551467997
Q gi|254780710|r 140 DRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED------DLYHYDLASFGNLLA---------KHPMFSEGVNLSIARV 204 (296)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~v~iGNPH~Vi~v~d------~i~~~~l~~~g~~i~---------~~~~Fp~gvNV~fv~v 204 (296)
...................+++.|+||+++.+.+ ..+..+|..+++.++ .++.||.+.||.++.+
T Consensus 194 ~~~~~~~~~~~~~~~~~v~~~~~g~p~~~v~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~v~~ 273 (414)
T 1w61_A 194 YQQDVVVVLPKPYGEVRVDIAFGGNFFAIVPAEQLGIDISVQNLSRLQEAGELLRTEINRSVKVQHPQLPHINTVDCVEI 273 (414)
T ss_dssp EEEEEEEECCTTTCEEEEEEEESSSEEEEEEGGGGTCCSSSTTHHHHHHHHHHHHHHHHHHCCCCCSSCTTCCSEEEEEE
T ss_pred HHCCCEEECCCCCCEEEEEEEECCEEEEEEEHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEE
T ss_conf 66495597378843289999847759999945671877681039999999999999998527641777887771469999
Q ss_pred CCCC------EEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCC---CEEEECCCCEEEEEEECC-------------
Q ss_conf 2887------289998046787665632358999999998178898---079990795799999589-------------
Q gi|254780710|r 205 TSLE------SLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR---AVSVKMLGGGLLIEWHDN------------- 262 (296)
Q Consensus 205 ~~~~------~I~iRt~ERGvGeTlACGTGA~Asa~~~~~~~~~~~---~v~V~~pGG~L~v~~~~~------------- 262 (296)
.++. ..+++++++|+.|+.+||||+||.+.++...++... -..+..+||.+.++|...
T Consensus 274 ~~~~~~~~~~~~R~f~p~~Gv~Ed~atGSa~~alaa~l~~~g~~~~~~~~~~~s~~Gg~~~v~i~qg~~~gr~~~~~~~~ 353 (414)
T 1w61_A 274 YGPPTNPEANYKNVVIFGNRQADRSPCGTGTSAKMATLYAKGQLRIGETFVYESILGSLFQGRVLGEERIPGVKVPVTKD 353 (414)
T ss_dssp EECCSSTTCSEEEEEEETTTEECSSCCHHHHHHHHHHHHHTTCCCTTCCEEEEETTSCEEEEEEEEEEEEETCCCTTCCT
T ss_pred ECCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCC
T ss_conf 57888888772599996999762698714099999999976997899937998325782799996787505523322124
Q ss_pred ----C---EEEEEECEEEEEEEEEEECCCC
Q ss_conf ----8---1999946289998899841320
Q gi|254780710|r 263 ----N---HVFMTGEAKKEWEGKLDIKTGK 285 (296)
Q Consensus 263 ----~---~i~l~Gpa~~vf~G~~~i~~~~ 285 (296)
+ .+.+.|.|..+++|++.|...+
T Consensus 354 ~~~~g~~~~v~v~G~A~~~~~g~~~v~~~D 383 (414)
T 1w61_A 354 AEEGMLVVTAEITGKAFIMGFNTMLFDPTD 383 (414)
T ss_dssp TSSEEEEEEEEEEECEEEEEEEEEEECTTC
T ss_pred CCCCCCEEEEEEEEEEEEEEEEEEEECCCC
T ss_conf 457873699999999999998899988999
No 13
>>2otn_A Diaminopimelate epimerase; DAP, lysine metabolism, X-RAY, lanthionine, isomeras; 2.40A {Bacillus anthracis str} (A:1-96,A:294-308)
Probab=99.88 E-value=1.3e-22 Score=168.54 Aligned_cols=73 Identities=26% Similarity=0.365 Sum_probs=61.4
Q ss_pred CEEEEECCCCCCEEEEECCCCCCCC--CHHHHHHHCC-CCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCH
Q ss_conf 1137851767738999477888788--8889987203-5671435589982588888668999971787621233203
Q gi|254780710|r 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALST-DDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNG 80 (296)
Q Consensus 6 i~F~Kmhg~GNDFiiiD~~~~~~~~--~~~~i~~~~~-~~giG~Dgli~i~~~~~~~~d~~m~~fN~DGS~A~mCGNG 80 (296)
++|+||||+||||||+|.++....+ .+++++.+|+ ++|||+||||+|+++. .+|++|+|||+|||+|+||---
T Consensus 24 i~F~KmhG~GNDFiIiD~r~~~~~~~~~~~~a~~lcdR~~GIGaDGil~i~~s~--~ad~~m~ifN~DGSeAemC~~~ 99 (111)
T 2otn_A 24 FSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSD--VAPVKMRMFNNDGSEGKSCAEV 99 (111)
T ss_dssp EEEEEEEETTEEEEEEETTTCCCCGGGHHHHHHHHHCTTTSCCCSEEEEEECCS--SSSEEEEEEETTSCEECCTCEE
T ss_pred CCEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEECC--CCCEEEEEEECCCCHHHCCCEE
T ss_conf 799987469996999989888798568899999876235685778799996168--8984899990799754221799
No 14
>>3g7k_A 3-methylitaconate isomerase; DAPF family fold, closed conformation, open conformation; 2.70A {Eubacterium barkeri} (A:)
Probab=99.85 E-value=3.7e-20 Score=152.35 Aligned_cols=269 Identities=14% Similarity=0.062 Sum_probs=163.9
Q ss_pred CEEEEECCCCCCEEEEECCCCCCCCCHHHHHHHCCC--C---C-----CCCCEEEEEECCCCCCCCEEEEEEECCCCCCC
Q ss_conf 113785176773899947788878888899872035--6---7-----14355899825888886689999717876212
Q gi|254780710|r 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD--D---N-----THFDQIMLIHDFQDASVDAFIRIINCDGSEVQ 75 (296)
Q Consensus 6 i~F~Kmhg~GNDFiiiD~~~~~~~~~~~~i~~~~~~--~---g-----iG~Dgli~i~~~~~~~~d~~m~~fN~DGS~A~ 75 (296)
+.|++++.+.+|+-..| ......+..- + | ...+++.+|.||.++.+|+.+.|++.|+++++
T Consensus 19 ~~~~~~e~l~~~~~~~D---------~lr~~lm~eP~~R~~~gm~G~~~~~skv~ii~pp~~p~aD~~~~f~q~~~~~~~ 89 (391)
T 3g7k_A 19 GIFLKGNDLPADQELRD---------KVILRIFGSPDVRQIDGLAGADPLTSKLAIIGPSTHPDADVDYTFAQVSITDAV 89 (391)
T ss_dssp EEEEEGGGSCSSHHHHH---------HHHHHHHTCSCTTCTTSSSCSSGGGSEEEEEEECCSTTCSEEEEEEEECSSSSC
T ss_pred EEEECHHHCCCCHHHHH---------HHHHHHHCCCCHHHCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEEECCCCE
T ss_conf 53661766898878999---------999997089980212676677666634999915878885047888865226643
Q ss_pred -----CCCCHHHHHHHHHHCC--C----CCCEEEEE--ECCCCEEEEEC-CCCEEEEC----------CCCCCCCH-HHC
Q ss_conf -----3320332231110013--5----76403798--35883799985-77427740----------36877777-768
Q gi|254780710|r 76 -----SCGNGMRCVVRFLTSR--M----KRKSFTFE--TIRGILVAKEN-RDGSISVD----------MGEPILDW-KLI 130 (296)
Q Consensus 76 -----mCGNG~Rc~a~yl~~~--~----~~~~~~i~--T~~g~~~~~~~-~~~~v~V~----------mG~p~~~~-~~i 130 (296)
||||+++|++.|+.+. . ....++|. +.++++.++.. .++.+.++ .+.|.+.. .+.
T Consensus 90 vd~~~mCGn~~~~v~~~ave~Glv~~~~~~t~v~i~~~n~~~~v~~~v~~~~G~v~~~g~~~i~gV~~~~~p~~l~~~d~ 169 (391)
T 3g7k_A 90 VDYNGNCGNISAGVGPFAIDESFVKAVEPMTRVCIHNTNTGKLLYAEVEVEDGKAKVSGDCKIDGVPGTNAPELMDFSDT 169 (391)
T ss_dssp EECSSCCHHHHHHHHHHHHHTTSSCCCSSEEEEEEEETTTCCEEEEEEEEETTEECCCCSBCCTTSSSCBCCEEEECGGG
T ss_pred EECCCCCCCHHHHCCHHHHHCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCCCCCCCEECCCCCCCCCCEECCCCCC
T ss_conf 30444544345403056886687246899368999971789778988755898122006623357888888326346787
Q ss_pred CCCCCC--CCCCCCEEECCCCCCCEECCEEEEECCCCEEEEECCCCCC------H------HHHHHHHHCCCC-------
Q ss_conf 565656--5434430110577774021309995587427974255768------6------888763100023-------
Q gi|254780710|r 131 PLARSF--DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY------H------YDLASFGNLLAK------- 189 (296)
Q Consensus 131 p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~iGNPH~Vi~v~d~i~------~------~~l~~~g~~i~~------- 189 (296)
+..... -.+......+.. ........+++.||||+++-.+ ++- . ..+..++..|+.
T Consensus 170 ~~~~~G~llPtg~~~d~i~~--~~g~v~v~~v~~G~p~~iV~a~-~lGl~~~~~~~~~~~~~~l~~~~e~iR~~a~~~mg 246 (391)
T 3g7k_A 170 AGAATGKVLPTGNVVDVLST--SKGDIDVSIVDVANPCIFVHAK-DVNMTGTETPDVINGNADLLAYLEEIRAKCCVKIG 246 (391)
T ss_dssp BTTTTSSSSTTSCSCEEECC--TTCCEEEEEEEBSSEEEEEESG-GGTCCSCCCHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCCEEEEC--CCCEEEEEEEECCCCEEEEEHH-HCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHC
T ss_conf 77778877789997507955--8980899999678848999867-75887754798784389999999999999999707
Q ss_pred -----------CCCCCCCCCE-----------EEEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCC----
Q ss_conf -----------3237555514-----------67997288728999804678766563235899999999817889----
Q gi|254780710|r 190 -----------HPMFSEGVNL-----------SIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN---- 243 (296)
Q Consensus 190 -----------~~~Fp~gvNV-----------~fv~v~~~~~I~iRt~ERGvGeTlACGTGA~Asa~~~~~~~~~~---- 243 (296)
|+.+|.-.-| ...+..+...+.+|+|++|...+..||||+||.+++++..|.+.
T Consensus 247 l~~~~~~~~~~~~~~pki~~v~~~~~~~~~~~g~~~~~~~~~~~~r~~~~g~~drs~~GTGa~A~~aa~~~~G~l~~~~~ 326 (391)
T 3g7k_A 247 MAATEKEASEKSPAFPMIAFVTKPEDYVDFSTGNTISGDDVDLVSRLMFMQVLHKTYAGTATACTGSAARIPGTIVNQVL 326 (391)
T ss_dssp SCSSHHHHHHHCSSSSEEEEEESCCCEECTTTCCEECTTSCSEEEEEECSSSBCSSCCHHHHHHHHHHHHSTTSHHHHHC
T ss_pred CCCCHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 77784574303688887999568765666556751336666668898258986323316778888887707984066650
Q ss_pred ------CCEEEECCCCEEEEEEEC-CC---EEEEEECEEEEEEEEEEECCCCC
Q ss_conf ------807999079579999958-98---19999462899988998413200
Q gi|254780710|r 244 ------RAVSVKMLGGGLLIEWHD-NN---HVFMTGEAKKEWEGKLDIKTGKW 286 (296)
Q Consensus 244 ------~~v~V~~pGG~L~v~~~~-~~---~i~l~Gpa~~vf~G~~~i~~~~~ 286 (296)
..+++..|.|.+.+.+.. +. .+.++|.|..+++|++.+..--|
T Consensus 327 ~~~~~~~~~~i~~~~G~i~~~~~~~~~~av~~~v~gtA~~~~~g~~~v~~d~~ 379 (391)
T 3g7k_A 327 RDTGDEDTVRIGHPAGVIPVVSIVKDGKVEKAALIRTARRIMEGYVYVEKAKL 379 (391)
T ss_dssp CCCTTCCEEEEEETTEEEEEEEEEETTEEEEEEEEECEEEEEEEEEEEEGGGC
T ss_pred CCCCCCCEEEEECCCCEEEEEEECCCCCEEEEEEEEEHHHHCEEEEECCHHHC
T ss_conf 36788765999789937999998589958999998630212207897667771
No 15
>>1xub_A Phenazine biosynthesis protein PHZF; biosynthetic protein; 1.30A {Pseudomonas fluorescens} (A:141-276)
Probab=99.58 E-value=1.2e-14 Score=115.93 Aligned_cols=103 Identities=14% Similarity=-0.041 Sum_probs=91.0
Q ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 09995587427974255768688876310002332375555146799728872899980467876656323589999999
Q gi|254780710|r 157 PFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 (296)
Q Consensus 157 ~~~v~iGNPH~Vi~v~d~i~~~~l~~~g~~i~~~~~Fp~gvNV~fv~v~~~~~I~iRt~ERGvGeTlACGTGA~Asa~~~ 236 (296)
+..+++||||+|++++ +...|..+++.++.++.|+.+.|+.|++..++.++++++|+||++|+.|||||+||.+.+.
T Consensus 26 ~~~vs~G~~~~vv~v~---~~~~l~~~~pd~~~~~~~~~~~~~~~~~~~~~~~~R~f~p~~Gv~EDpatGSa~~ala~~l 102 (136)
T 1xub_A 26 IEIYHNGPRHVFVGLP---SIDALSALHPDHRALSNFHDMAINCFAGAGRRWRSRMFSPAYGVVEDAATGSAAGPLAIHL 102 (136)
T ss_dssp CEEEESSSEEEEEECS---SHHHHHHCCCCHHHHTTSCSCEEEEEEEETTEEEEEEEBGGGTBSSCSCCHHHHHHHHHHH
T ss_pred EEEEECCCCEEEEEEC---CHHHHHHHHHCHHHHHCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 4999738971999976---8999987430487752234431021121476313785014678663514506689999999
Q ss_pred HHHCCCCC--CEEEEC-----CCCEEEEEEECC
Q ss_conf 98178898--079990-----795799999589
Q gi|254780710|r 237 GCLHKTNR--AVSVKM-----LGGGLLIEWHDN 262 (296)
Q Consensus 237 ~~~~~~~~--~v~V~~-----pGG~L~v~~~~~ 262 (296)
..++..+. ++++.+ ++|.+.+++.+|
T Consensus 103 ~~~~~~~~~~~~~~~QG~~~gR~g~i~v~~~~d 135 (136)
T 1xub_A 103 ARHGQIEFGQPVEILQGVEIGRPSLMFAKAEGR 135 (136)
T ss_dssp HHTTSSCTTCCEEEEECGGGTCCEEEEEEEEEE
T ss_pred HHHCCCCCCEEEEEEECCCCCCCEEEEEEEECC
T ss_conf 982888887279998334359986999999817
No 16
>>1xub_A Phenazine biosynthesis protein PHZF; biosynthetic protein; 1.30A {Pseudomonas fluorescens} (A:1-140,A:277-298)
Probab=98.06 E-value=3.2e-05 Score=53.85 Aligned_cols=109 Identities=21% Similarity=0.294 Sum_probs=83.2
Q ss_pred EEEECCCCCCEEEE-ECCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 37851767738999-47788878888899872035671435589982588888668999971787621233203322311
Q gi|254780710|r 8 FAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVR 86 (296)
Q Consensus 8 F~Kmhg~GNDFiii-D~~~~~~~~~~~~i~~~~~~~giG~Dgli~i~~~~~~~~d~~m~~fN~DGS~A~mCGNG~Rc~a~ 86 (296)
|++-...||---|+ | ...++.++.+.++++.+. ---.|+.++. ..+++++|||.+.+ |-.+||.++-++++
T Consensus 30 Ft~~~f~GNpaaVvl~----~~~L~~~~Mq~IA~e~n~--sETaFv~~~~-~~a~~~iR~FTP~~-Ei~fCGHaTLaaa~ 101 (162)
T 1xub_A 30 FASVPLEGNPVAVFFD----ADDLPPAQMQRIAREMNL--SESTFVLKPR-NGGDALIRIFTPVN-ELPFAGAPLLGTAI 101 (162)
T ss_dssp TCSSTTSSEEEEEECS----GGGSCHHHHHHHHHHHCS--SCEEEEECCS-SSSSEEEEEECSSC-EESCCHHHHHHHHH
T ss_pred CCCCCCCCCEEEEEEC----CCCCCHHHHHHHHHHHCC--CEEEEEECCC-CCCCEEEEEEECCC-CEECCCHHHHHHHH
T ss_conf 6699999752699968----989799999999998799--8799996687-88868999994578-44216601789999
Q ss_pred HHHCCCCCCEEEEEECCCCEEEEECC--CCEEEECCCCCC
Q ss_conf 10013576403798358837999857--742774036877
Q gi|254780710|r 87 FLTSRMKRKSFTFETIRGILVAKENR--DGSISVDMGEPI 124 (296)
Q Consensus 87 yl~~~~~~~~~~i~T~~g~~~~~~~~--~~~v~V~mG~p~ 124 (296)
+|.+......+.++|.+|.+.++... ...+.+.|..|.
T Consensus 102 ~L~~~~~~~~~~let~aG~v~V~v~~e~g~~~~a~ld~P~ 141 (162)
T 1xub_A 102 ALGAHTDNHRLYLETQMGTIAFELERQNGSVIAASMDQPE 141 (162)
T ss_dssp HHHTTCCCSEEEEEETTEEEEEEEEEETTEEEEEEEECCT
T ss_pred HHHHHCCCCCEEEEEEEEEEEEEEECCCCEEEEEECCCCC
T ss_conf 9974125541036787404889996146607887147889
No 17
>>1u0k_A Gene product PA4716; sctructural genomics, MCSG, protein structure initiative, structural genomics, PSI; 1.50A {Pseudomonas aeruginosa PAO1} (A:)
Probab=96.64 E-value=0.037 Score=33.69 Aligned_cols=98 Identities=9% Similarity=-0.049 Sum_probs=69.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 58742797425576868887631000233237555514679972887289998046787665632358999999998178
Q gi|254780710|r 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 (296)
Q Consensus 162 iGNPH~Vi~v~d~i~~~~l~~~g~~i~~~~~Fp~gvNV~fv~v~~~~~I~iRt~ERGvGeTlACGTGA~Asa~~~~~~~~ 241 (296)
.|||=.|+...+.+.......+.+.+.... .-|+...++.....+.|=.=.+|-.-||-|+.|++.+....+.
T Consensus 19 ~GNp~~Vv~~~~~l~~~~~~~iA~~~~~~~-------t~fi~~~~~~~~~~~~~~~~~~e~~~CGh~t~~~a~~l~~~g~ 91 (288)
T 1u0k_A 19 TGNGLAVFDDASALDDAAXQAWTRELRQFE-------SIFLLPGDDPRAFRARIFTLEEELPFAGHPLLGAAALLHHLRG 91 (288)
T ss_dssp CSEEEEEESCCTTCCHHHHHHHHHHHCCSE-------EEEEEECSCTTEEEEEEEESSCBCCSCCTHHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCE-------EEEEECCCCCCEEEEEEEECCCCHHCCCCCHHHHHHHHHHHCC
T ss_conf 887569998899969999999999869986-------9999636789879999961788611046642235653311102
Q ss_pred CC--CCEEEECCCCEEEEEEECCCEEE
Q ss_conf 89--80799907957999995898199
Q gi|254780710|r 242 TN--RAVSVKMLGGGLLIEWHDNNHVF 266 (296)
Q Consensus 242 ~~--~~v~V~~pGG~L~v~~~~~~~i~ 266 (296)
.. ..+.+.+++|.+.++...++...
T Consensus 92 ~~~~~~~~~~t~~G~~~v~~~~d~~~~ 118 (288)
T 1u0k_A 92 GDNEQHWTLHLASKSVALRSVRAGSGF 118 (288)
T ss_dssp CSSCEEEEEECSSCEEEEEEEEETTEE
T ss_pred CCCCCEEEEEECCCCEEEEEEECCCCE
T ss_conf 467716999953764068885047612
No 18
>>1qya_A ORFB, hypothetical protein YDDE; putative phenazine biosynthesis protein, epimerase, antibiotic biosynthesis protein, structural genomics; 2.00A {Escherichia coli} (A:)
Probab=96.61 E-value=0.036 Score=33.79 Aligned_cols=94 Identities=15% Similarity=0.190 Sum_probs=73.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 58742797425576868887631000233237555514679972887289998046787665632358999999998178
Q gi|254780710|r 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 (296)
Q Consensus 162 iGNPH~Vi~v~d~i~~~~l~~~g~~i~~~~~Fp~gvNV~fv~v~~~~~I~iRt~ERGvGeTlACGTGA~Asa~~~~~~~~ 241 (296)
-|||=.|+...+.+....+..+...+... -+-|++..+.....+|.|.= .||..-||-|+.|++.++...++
T Consensus 27 ~GN~~~Vv~~~~~~~~~~~~~~a~~~~~~-------~t~fv~~~~~~~~~~r~f~~-~ge~~~CGh~t~~~a~~l~~~~~ 98 (307)
T 1qya_A 27 RGNSAGVVFPADNLSEAQMQLIARELGHS-------ETAFLLHSDDSDVRIRYFTP-TVEVPICGHATVAAHYVRAKVLG 98 (307)
T ss_dssp CSEEEEEEECCTTCCHHHHHHHHHHHCCS-------CEEEEECCSSSSEEEEEECS-SSEECC--CHHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCC-------EEEEEECCCCCCEEEEEECC-CCHHHCCCCHHHHHHHHHHHHCC
T ss_conf 87643999889898999999999986996-------69999768888469999678-74332256508999999997347
Q ss_pred CC-CCEEEECCCCEEEEEEECCC
Q ss_conf 89-80799907957999995898
Q gi|254780710|r 242 TN-RAVSVKMLGGGLLIEWHDNN 263 (296)
Q Consensus 242 ~~-~~v~V~~pGG~L~v~~~~~~ 263 (296)
.. ..+.+.+++|.+.++...++
T Consensus 99 ~~~~~~~~~t~~G~~~v~~~~~~ 121 (307)
T 1qya_A 99 LGNCTIWQTSLAGKHRVTIEKHN 121 (307)
T ss_dssp CCSEEEEEECC--CEEEEEEEET
T ss_pred CCCCEEEEEECCCCEEEEEEECC
T ss_conf 57760688750574267664058
No 19
>>2gke_A DAP epimerase, diaminopimelate epimerase; enzyme-inhibitor complex, covalently bound inhibitor, isomerase; HET: ZDP; 1.35A {Haemophilus influenzae} (A:)
Probab=96.46 E-value=0.072 Score=31.80 Aligned_cols=105 Identities=16% Similarity=0.181 Sum_probs=70.9
Q ss_pred EECCCCEEEEECCCC---CCHHHHHHHHHCCCCCCCCCCCCCEEEEEEC--CCCEEEEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf 955874279742557---6868887631000233237555514679972--88728999804678766563235899999
Q gi|254780710|r 160 VSMGNPHAIFFVEDD---LYHYDLASFGNLLAKHPMFSEGVNLSIARVT--SLESLDLRTWERGVGLTAACGSAACASVV 234 (296)
Q Consensus 160 v~iGNPH~Vi~v~d~---i~~~~l~~~g~~i~~~~~Fp~gvNV~fv~v~--~~~~I~iRt~ERGvGeTlACGTGA~Asa~ 234 (296)
-..|||=.|+.-.+. +.......+...-+.+ .+ -.+-|+... +....++|.|.----|..=||.|+.|++.
T Consensus 7 ~~~GN~~~Vv~~~~~~~~l~~~~~q~ia~e~r~~-~~---~~~~fv~~~~~~~~~~~~r~f~~~G~e~~~CGh~t~a~a~ 82 (274)
T 2gke_A 7 HGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGI-GF---DQLLIVEAPYDPELDFHYRIFNADGSEVSQCGNGARCFAR 82 (274)
T ss_dssp EETTEEEEEEECSSSCCCCCHHHHHHHHCTTTSC-CC---SEEEEEECCSSTTSSEEEEEEETTSCEESCCHHHHHHHHH
T ss_pred ECCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCC-CC---CEEEEEECCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 6499839999789886789999999875668785-76---5799997277887550689860664576531138899999
Q ss_pred HHHHHCCCC-CCEEEECCCCEEEEEEECCCEEEEE
Q ss_conf 999817889-8079990795799999589819999
Q gi|254780710|r 235 ASGCLHKTN-RAVSVKMLGGGLLIEWHDNNHVFMT 268 (296)
Q Consensus 235 ~~~~~~~~~-~~v~V~~pGG~L~v~~~~~~~i~l~ 268 (296)
+....++.. ..+.+.+++|.+.++...++.+++.
T Consensus 83 ~l~~~~~~~~~~~~l~t~~g~~~v~~~~~~~~~~~ 117 (274)
T 2gke_A 83 FVTLKGLTNKKDISVSTQKGNMVLTVKDDNQIRVN 117 (274)
T ss_dssp HHHHTTSCCCSEEEEECSSCEEEEEECTTSCEEEE
T ss_pred HHHHHCCCCCCEEEEEECCCCEEEEECCCCEEEEC
T ss_conf 99862235431269996587247752136258741
No 20
>>1s7j_A Phenazine biosynthesis protein PHZF family; bacteria, structural genomics, PSI, protein structure initiative; 2.30A {Enterococcus faecalis V583} (A:)
Probab=96.32 E-value=0.086 Score=31.29 Aligned_cols=100 Identities=15% Similarity=0.090 Sum_probs=75.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 58742797425576868887631000233237555514679972887289998046787665632358999999998178
Q gi|254780710|r 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 (296)
Q Consensus 162 iGNPH~Vi~v~d~i~~~~l~~~g~~i~~~~~Fp~gvNV~fv~v~~~~~I~iRt~ERGvGeTlACGTGA~Asa~~~~~~~~ 241 (296)
.|||=.|++..+.+.......+.+.+.... ..|+... .....+|.|..+ ||-.-||.|+.|++.+....+.
T Consensus 17 ~GN~~~Vv~~~~~l~~~~~~~ia~~~~~~~-------t~fv~~~-~~~~~vr~f~~~-ge~~~CGh~t~a~a~~l~~~g~ 87 (262)
T 1s7j_A 17 KGNPAAVYVLEKWLPEAVMQNIAIENNLSE-------TAFTVKE-GQSYALRWFTPE-REIDLCGHATLATAFVLFNYYS 87 (262)
T ss_dssp SSEEEEEEECSSCCCHHHHHHHHHHHCCSC-------EEEEEEE-TTEEEEEEECSS-SEESCCHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCC-------EEEECCC-CCCEEEEEEECC-CCEEEECCCHHHHHHHHHHHCC
T ss_conf 973359998998989999999999869995-------4998666-674035898525-6466606752888999997367
Q ss_pred CC-CCEEEECCCCEEEEEEECCCEEEEEEC
Q ss_conf 89-807999079579999958981999946
Q gi|254780710|r 242 TN-RAVSVKMLGGGLLIEWHDNNHVFMTGE 270 (296)
Q Consensus 242 ~~-~~v~V~~pGG~L~v~~~~~~~i~l~Gp 270 (296)
.. .++.+.+++|.+.++..+++.+....+
T Consensus 88 ~~~~~~~i~t~~G~v~~~~~~~~~~~~~~~ 117 (262)
T 1s7j_A 88 VAEETLHFTSQSGPLAVTKKEEYYYLDFPY 117 (262)
T ss_dssp CCSSEEEEEETTEEEEEEEETTEEEEEEEC
T ss_pred CCCCCEEEEEECCCEEEEECCCCCCCCCCC
T ss_conf 676514899612320122124544111245
No 21
>>1xub_A Phenazine biosynthesis protein PHZF; biosynthetic protein; 1.30A {Pseudomonas fluorescens} (A:1-140,A:277-298)
Probab=96.25 E-value=0.077 Score=31.61 Aligned_cols=102 Identities=18% Similarity=0.208 Sum_probs=73.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEE-CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 5874279742557686888763100023323755551467997-288728999804678766563235899999999817
Q gi|254780710|r 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARV-TSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 (296)
Q Consensus 162 iGNPH~Vi~v~d~i~~~~l~~~g~~i~~~~~Fp~gvNV~fv~v-~~~~~I~iRt~ERGvGeTlACGTGA~Asa~~~~~~~ 240 (296)
.|||=+|++..+++.......+++.+...+ .-|+.- .+....++|.|==+ +|=.-||-+++|++.+.....
T Consensus 36 ~GNpaaVvl~~~~L~~~~Mq~IA~e~n~sE-------TaFv~~~~~~a~~~iR~FTP~-~Ei~fCGHaTLaaa~~L~~~~ 107 (162)
T 1xub_A 36 EGNPVAVFFDADDLPPAQMQRIAREMNLSE-------STFVLKPRNGGDALIRIFTPV-NELPFAGAPLLGTAIALGAHT 107 (162)
T ss_dssp SSEEEEEECSGGGSCHHHHHHHHHHHCSSC-------EEEEECCSSSSSEEEEEECSS-CEESCCHHHHHHHHHHHHTTC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCE-------EEEEECCCCCCCEEEEEEECC-CCEECCCHHHHHHHHHHHHHC
T ss_conf 975269996898979999999999879987-------999966878886899999457-844216601789999997412
Q ss_pred CCCCCEEEECCCCEEEEEEE-CCCE---EEEEECEE
Q ss_conf 88980799907957999995-8981---99994628
Q gi|254780710|r 241 KTNRAVSVKMLGGGLLIEWH-DNNH---VFMTGEAK 272 (296)
Q Consensus 241 ~~~~~v~V~~pGG~L~v~~~-~~~~---i~l~Gpa~ 272 (296)
. .....+..+.|.+.|++. +++. +.+.-|-.
T Consensus 108 ~-~~~~~let~aG~v~V~v~~e~g~~~~a~ld~P~~ 142 (162)
T 1xub_A 108 D-NHRLYLETQMGTIAFELERQNGSVIAASMDQPEQ 142 (162)
T ss_dssp C-CSEEEEEETTEEEEEEEEEETTEEEEEEEECCTE
T ss_pred C-CCCEEEEEEEEEEEEEEECCCCEEEEEECCCCCC
T ss_conf 5-5410367874048899961466078871478896
No 22
>>3ejx_A DAP epimerase, diaminopimelate epimerase, chloroplastic; PLP-independenet amino acid racemase, aziridino-diaminopimelate, isomerase; HET: ZDP; 1.95A {Arabidopsis thaliana} PDB: 3ekm_A* (A:)
Probab=95.77 E-value=0.15 Score=29.62 Aligned_cols=105 Identities=12% Similarity=0.069 Sum_probs=71.5
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCC-CCCCCCCCEEEEEECC-CCEEEEEECCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 558742797425576868887631000233-2375555146799728-87289998046787665632358999999998
Q gi|254780710|r 161 SMGNPHAIFFVEDDLYHYDLASFGNLLAKH-PMFSEGVNLSIARVTS-LESLDLRTWERGVGLTAACGSAACASVVASGC 238 (296)
Q Consensus 161 ~iGNPH~Vi~v~d~i~~~~l~~~g~~i~~~-~~Fp~gvNV~fv~v~~-~~~I~iRt~ERGvGeTlACGTGA~Asa~~~~~ 238 (296)
..|||=.|+.-.+.+.......+.+.+... ..|- .-.+-++.-.+ .....+|.|.-=-.|=.=||-|..|++.+...
T Consensus 34 ~~GNp~~VV~~~~~l~~~~~~~iA~~l~~~et~f~-~~~~~~v~~~~~~a~~~~~~~~~~g~e~~~CGh~tia~a~~L~~ 112 (317)
T 3ejx_A 34 GLGNDFILVDNRDSSEPKITQEQAAKLCDRNFGVG-ADGVIFAMPGVNGTDYAMRIFNSDGSEPEMCGNGVRCFARFIAE 112 (317)
T ss_dssp ETTEEEEEEECTTCSSCSSCHHHHHHHTCTTTSSC-CSEEEEEEECSTTCSEEEEEEETTSCCCSCCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCCCC-CCEEEEECCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 59988999966888776799999998636567878-76599987788888589999959998988684119999999998
Q ss_pred HCCCC--CCEEEECCCCEEEEEEECCCEEE
Q ss_conf 17889--80799907957999995898199
Q gi|254780710|r 239 LHKTN--RAVSVKMLGGGLLIEWHDNNHVF 266 (296)
Q Consensus 239 ~~~~~--~~v~V~~pGG~L~v~~~~~~~i~ 266 (296)
.+... ..+.+.++.|.+.++...++.+.
T Consensus 113 ~~~~~~~~~~~~~t~~G~~~v~~~~~~~~~ 142 (317)
T 3ejx_A 113 LENLQGKHSFTIHTGAGLIVPEIQDDGQVK 142 (317)
T ss_dssp HTTCCSCCBCCEEETTEEEEEEECTTSCEE
T ss_pred HCCCCCCCEEEEEECCCEEEEEEECCCCEE
T ss_conf 589988967999969917999995798489
No 23
>>2azp_A Hypothetical protein PA1268; PA1268,APC5861,sulfur SAD, structural genomics, PSI, protein structure initiative; 2.13A {Pseudomonas aeruginosa} (A:)
Probab=94.84 E-value=0.3 Score=27.71 Aligned_cols=119 Identities=11% Similarity=0.105 Sum_probs=76.5
Q ss_pred EECCCCEEEEECCC-----CCCHHHHHHHHHCCCC-------CCCCCCCCCEEEEEE--CCCCEEEEEECCCCCCCCCCC
Q ss_conf 95587427974255-----7686888763100023-------323755551467997--288728999804678766563
Q gi|254780710|r 160 VSMGNPHAIFFVED-----DLYHYDLASFGNLLAK-------HPMFSEGVNLSIARV--TSLESLDLRTWERGVGLTAAC 225 (296)
Q Consensus 160 v~iGNPH~Vi~v~d-----~i~~~~l~~~g~~i~~-------~~~Fp~gvNV~fv~v--~~~~~I~iRt~ERGvGeTlAC 225 (296)
-..|||=.|++-.+ ++.......+.+.+.. .+....+.+--|+-. .+....++|.|.. -||.--|
T Consensus 12 ~~~GNp~~VV~~~~~~~~~~~~~~~~~~ia~e~~~~~t~fi~~~~~~~~~e~~~v~~~~~~~a~~~ir~f~p-~gE~~~C 90 (318)
T 2azp_A 12 HTGGEPTRLVIGGFPDLGQGDMAERRRLLGERHDAWRAACILEPRGSDVLVGALLCAPVDPEACAGVIFFNN-SGYLGMC 90 (318)
T ss_dssp EETTEEEEEEEECSCCCCSSCHHHHHHHHHHHCHHHHHHHHSTTTSCTTCEEEEEECCSSTTSSEEEEEECS-SSBCSCC
T ss_pred CCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCHHHHHHEECCCCCCCCEEEEEECCCCCCCCEEEEEECC-CCCCCCC
T ss_conf 689976689973987899989999999998741457686402776766540016503578788579999658-8744310
Q ss_pred HHHHHHHHHHHHHHCCCCC-CEEEECCCCEEEEEEECCCEEEEEECEEEEEEEEE
Q ss_conf 2358999999998178898-07999079579999958981999946289998899
Q gi|254780710|r 226 GSAACASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 (296)
Q Consensus 226 GTGA~Asa~~~~~~~~~~~-~v~V~~pGG~L~v~~~~~~~i~l~Gpa~~vf~G~~ 279 (296)
|-|..|++.++...+.... .+.+.++.|.+.+++..++.+.+..+......-..
T Consensus 91 Gh~tla~a~~l~~~~~~~~~~~~i~t~~g~v~v~~~~~~~~~~~~~~~~~~~~~~ 145 (318)
T 2azp_A 91 GHGTIGLVASLAHLGRIGPGVHRIETPVGEVEATLHEDGSVSVRNVPAYRYRRQV 145 (318)
T ss_dssp HHHHHHHHHHHHHTTSCCSEEEEEECTTCCEEEEECTTSCEEEECSCBEEEEEEE
T ss_pred CCCCEEEEEEHHHCCCCCCCEEEEEECCCCEEEEEEEEEEEECCCCCCCCCCCCC
T ss_conf 1241236760414498202269998068301589997310100257861112476
No 24
>>3fve_A DAP epimerase, diaminopimelate epimerase; alpha/beta, amino-acid biosynthesis, cytoplasm, isomerase, lysine biosynthesis; 2.60A {Mycobacterium tuberculosis} (A:)
Probab=93.71 E-value=0.46 Score=26.48 Aligned_cols=57 Identities=11% Similarity=0.029 Sum_probs=44.5
Q ss_pred CCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCC-CCEEEECCCCEEEEEEECC
Q ss_conf 88728999804678766563235899999999817889-8079990795799999589
Q gi|254780710|r 206 SLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN-RAVSVKMLGGGLLIEWHDN 262 (296)
Q Consensus 206 ~~~~I~iRt~ERGvGeTlACGTGA~Asa~~~~~~~~~~-~~v~V~~pGG~L~v~~~~~ 262 (296)
+.....+|.|..=-.|=.-||-|..|++.+....+... ..+.+.+++|.+.+....+
T Consensus 69 ~~~~~~~r~f~~~G~E~~~CGh~t~~~a~~l~~~~~~~~~~~~~~t~~g~v~v~~~~~ 126 (290)
T 3fve_A 69 RVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPVTCHHV 126 (290)
T ss_dssp CTTSEEEEEEETTSCBCCTTCTTHHHHHHHHHHTTSCCCSEEEEECTTCCEEEEEEEE
T ss_pred CCCCEEEEEECCCCCHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEECC
T ss_conf 5655699998899887765747899999999986887310166542157235565114
No 25
>>1tm0_A Proline racemase; structural genomics, alpha-beta protein THAT resembles double-beta barrel; 2.80A {Brucella melitensis 16M} (A:)
Probab=93.22 E-value=0.61 Score=25.65 Aligned_cols=102 Identities=10% Similarity=-0.031 Sum_probs=67.0
Q ss_pred ECCCCEEEEECC-----CCCCHHHHHHHHHCCCC------CCCCCCCCCEEEE-EEC-CCCEEEEEECCCCCCCCCCCHH
Q ss_conf 558742797425-----57686888763100023------3237555514679-972-8872899980467876656323
Q gi|254780710|r 161 SMGNPHAIFFVE-----DDLYHYDLASFGNLLAK------HPMFSEGVNLSIA-RVT-SLESLDLRTWERGVGLTAACGS 227 (296)
Q Consensus 161 ~iGNPH~Vi~v~-----d~i~~~~l~~~g~~i~~------~~~Fp~gvNV~fv-~v~-~~~~I~iRt~ERGvGeTlACGT 227 (296)
..|||=.|+... +++.......+.+.+.. ++.+..|.+--++ .-. .....++|.|.- .||---||-
T Consensus 14 ~~GNp~~Vv~~~~~~~~~~l~~~~mq~iA~~~~~set~f~~p~~g~g~dg~~~v~~~~~~ad~~ir~ftp-~gE~~~CGh 92 (350)
T 1tm0_A 14 AEGEVGDVIVGGVAPPPGETVWEQSRFIANDETLRNFVLNKPRGGVFRHVNLLVPPKDPRAQXGFIIXEP-ADTPPXSGS 92 (350)
T ss_dssp ETTEECEEEEESCCCCSSSSHHHHHHHHHHHCHHHHHHHSTTTSCSSCCEEEEECCCSSSCSEEEECCCS-SCCCSCCHH
T ss_pred CCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCEEEEEECC-CCCCCCCCC
T ss_conf 8988748996389899998999999998741379899744899887558999838999887789999746-755677665
Q ss_pred HHHHHHHHHHHHCCCC-----CCEEEECCCCEEEEEEECCC
Q ss_conf 5899999999817889-----80799907957999995898
Q gi|254780710|r 228 AACASVVASGCLHKTN-----RAVSVKMLGGGLLIEWHDNN 263 (296)
Q Consensus 228 GA~Asa~~~~~~~~~~-----~~v~V~~pGG~L~v~~~~~~ 263 (296)
|..|++.++...++.. ..+++.++.|.+.++...++
T Consensus 93 ~ti~~a~~l~~~g~i~~~~~~~~~~~~t~~G~v~v~~~~~~ 133 (350)
T 1tm0_A 93 NSICVSTVLLDSGIIAXQEPVTHXVLEAPGGIIEVEAECRN 133 (350)
T ss_dssp HHHHHHHHHHHHTSSCCCSSEEEEEEECSSCEEEEEEEECS
T ss_pred CHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEEEEECC
T ss_conf 06657578766424357899359998579867999999959
No 26
>>3edn_A Phenazine biosynthesis protein, PHZF family; diaminopimelate epimerase-like fold, alpha and beta protein class, structural genomics; HET: MSE; 1.50A {Bacillus anthracis} (A:)
Probab=92.95 E-value=0.67 Score=25.40 Aligned_cols=93 Identities=17% Similarity=0.228 Sum_probs=67.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 58742797425576868887631000233237555514679972887289998046787665632358999999998178
Q gi|254780710|r 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 (296)
Q Consensus 162 iGNPH~Vi~v~d~i~~~~l~~~g~~i~~~~~Fp~gvNV~fv~v~~~~~I~iRt~ERGvGeTlACGTGA~Asa~~~~~~~~ 241 (296)
.|||=.|+...+.+.......+...+.... .-|+...+.....+|.|-=| +|-.-||-|+.|++.+....+.
T Consensus 18 ~GN~~~Vv~~~~~~~~~~~~~ia~~~~~~~-------t~fv~~~~~~~~~~~~~~~g-~e~~~CGh~t~~~a~~l~~~~~ 89 (299)
T 3edn_A 18 XGNPAGIVLDADGLTEEEXQRIAEKVGFNE-------TSFVLSSEVADIRXRYFTPG-YEXDLCGHGTVGTIYALRERGL 89 (299)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHHHCSSC-------EEEEECCSSSSEEEEEECSS-CEESCCHHHHHHHHHHHHHTTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCE-------EEEEECCCCCCEEEEEEECC-CCHHHCCCCCCHHHHHHHHHCC
T ss_conf 887569998899989999999999859988-------99996478884799998446-7420037761235888987255
Q ss_pred CC--CCEEEECCCCEEEEEEECC
Q ss_conf 89--8079990795799999589
Q gi|254780710|r 242 TN--RAVSVKMLGGGLLIEWHDN 262 (296)
Q Consensus 242 ~~--~~v~V~~pGG~L~v~~~~~ 262 (296)
.. ..+++.+++|.+.++...+
T Consensus 90 ~~~~~~~~~~t~~G~~~v~~~~~ 112 (299)
T 3edn_A 90 LEEKASLTIETKAGILPIQIGVN 112 (299)
T ss_dssp SCSCSEEEEEETTEEEEEEEEEC
T ss_pred CCCCCEEEEEECCCCEEEEEEEC
T ss_conf 67784488996166313467622
No 27
>>1sr8_A Cobalamin biosynthesis protein (CBID); structural genomics, PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus dsm 4304} (A:1-193)
Probab=73.67 E-value=3 Score=21.15 Aligned_cols=16 Identities=25% Similarity=0.231 Sum_probs=8.9
Q ss_pred CCEEEECCCCE-EEEEE
Q ss_conf 80799907957-99999
Q gi|254780710|r 244 RAVSVKMLGGG-LLIEW 259 (296)
Q Consensus 244 ~~v~V~~pGG~-L~v~~ 259 (296)
..|+|..|.|. +.+..
T Consensus 64 ~~V~I~lP~G~~~~ipv 80 (193)
T 1sr8_A 64 EKVKVSTPAGVDVEVEV 80 (193)
T ss_dssp EEEEECCTTSCCEEEEE
T ss_pred CEEEEECCCCCEEEEEE
T ss_conf 78999887997799998
No 28
>>3hia_A Choline binding protein; beta hairpin; 2.38A {Streptococcus pneumoniae R6} (A:1-35)
Probab=57.01 E-value=5.2 Score=19.51 Aligned_cols=12 Identities=33% Similarity=0.368 Sum_probs=9.9
Q ss_pred EEEEEECCCCCC
Q ss_conf 999971787621
Q gi|254780710|r 63 FIRIINCDGSEV 74 (296)
Q Consensus 63 ~m~~fN~DGS~A 74 (296)
-|-|||.|||-|
T Consensus 24 mwyfyntdgsma 35 (35)
T 3hia_A 24 MWYFYNTDGSMA 35 (35)
T ss_dssp EEEEECTTSCBC
T ss_pred EEEEECCCCCEE
T ss_conf 899992788737
No 29
>>1mjt_A Nitric-oxide synthase homolog; sanos, NO, NOS, bacterial, MRSA, seitu, oxidoreductase; HET: SUC HEM NAD; 2.40A {Staphylococcus aureus} (A:1-113,A:178-225,A:325-347)
Probab=23.92 E-value=16 Score=16.35 Aligned_cols=51 Identities=16% Similarity=0.112 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHCCCCCC-----------------EEEEEECCCC----EEEEECCCCEEEECCCCCCCCHH
Q ss_conf 203322311100135764-----------------0379835883----79998577427740368777777
Q gi|254780710|r 78 GNGMRCVVRFLTSRMKRK-----------------SFTFETIRGI----LVAKENRDGSISVDMGEPILDWK 128 (296)
Q Consensus 78 GNG~Rc~a~yl~~~~~~~-----------------~~~i~T~~g~----~~~~~~~~~~v~V~mG~p~~~~~ 128 (296)
=|..||++|.-+++...- .+..-|..|. +.+...++--.+|.+..|.+.|-
T Consensus 58 RNs~RCIGRi~W~~L~V~DaR~v~ta~~mfeal~~Hl~yATN~G~IR~~ITVFpprelvlEV~i~HP~~~wf 129 (184)
T 1mjt_A 58 RNSNRCIGRLFWDSLNVIDARDVTDEASFLSSITYHITQATNEGKLKPYITIYAPKSLIKEVPIEHNHYPKL 129 (184)
T ss_dssp HTCTTCTTGGGGGGCEEEEETTCCSHHHHHHHHHHHHHHHHGGGSCCCEEEEECSSGGSCEEECCCTTCGGG
T ss_pred CCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHEEEEECCCCCCCCH
T ss_conf 145523230022767266667899989999999999998717998762489857998936871108998457
No 30
>>1otg_A 5-carboxymethyl-2-hydroxymuconate isomerase; 2.10A {Escherichia coli C} (A:)
Probab=22.38 E-value=43 Score=13.47 Aligned_cols=38 Identities=26% Similarity=0.377 Sum_probs=22.9
Q ss_pred CEEEEECCCCCCH-HHHHHHHHC----CCCCCCCCC-CCCEEEE
Q ss_conf 4279742557686-888763100----023323755-5514679
Q gi|254780710|r 165 PHAIFFVEDDLYH-YDLASFGNL----LAKHPMFSE-GVNLSIA 202 (296)
Q Consensus 165 PH~Vi~v~d~i~~-~~l~~~g~~----i~~~~~Fp~-gvNV~fv 202 (296)
||+++.-+++++. ++...+-.. +-....||. ++-+=+.
T Consensus 1 PH~iIEyS~nL~~~~d~~~l~~~l~~~~~~sg~F~~~~iK~Ra~ 44 (125)
T 1otg_A 1 PHFIVECSDNIREEADLPGLFAKVNPTLAATGIFPLAGIRSRVH 44 (125)
T ss_dssp CEEEEEEEGGGHHHHTHHHHHHHHHHHHHTTSSSCGGGCEEEEE
T ss_pred CEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEE
T ss_conf 91999947880001799999999999997079989667388478
No 31
>>1yy9_A Epidermal growth factor receptor; cell surface receptor, tyrosine kinase, glycoprotein, antigen:antibody complex, FAB fragment, antitumor, drug; HET: NDG NAG BMA MAN; 2.60A {Homo sapiens} (A:242-257,A:548-624)
Probab=21.29 E-value=47 Score=13.20 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=19.2
Q ss_pred CEEEEEEECCCCCCCCC------CCHHHHHHHH
Q ss_conf 68999971787621233------2033223111
Q gi|254780710|r 61 DAFIRIINCDGSEVQSC------GNGMRCVVRF 87 (296)
Q Consensus 61 d~~m~~fN~DGS~A~mC------GNG~Rc~a~y 87 (296)
.++|.+ |+-|++|..| -+|.+|+++=
T Consensus 9 ~~~~~~-~~sG~g~DqC~~CAh~kDGp~CVa~C 40 (93)
T 1yy9_A 9 TYQMDV-NPTGRGPDNCIQCAHYIDGPHCVKTC 40 (93)
T ss_dssp TTEEEE-CTSSSSTTSBSSBSSEEETTEEESSC
T ss_pred CEEECC-CCCCCCCCCCCCCCCCCCCCEECCCC
T ss_conf 147447-84699988778887756089641338
No 32
>>1xvs_A Protein APAG; MCSG APC26324, midwest center for structural genomics, protein structure initiative, PSI, structural genomics, unknown function; 2.01A {Vibrio cholerae} (A:)
Probab=21.24 E-value=48 Score=13.20 Aligned_cols=20 Identities=25% Similarity=0.360 Sum_probs=17.9
Q ss_pred EEEEEECCCCCCCCCCCHHH
Q ss_conf 99997178762123320332
Q gi|254780710|r 63 FIRIINCDGSEVQSCGNGMR 82 (296)
Q Consensus 63 ~m~~fN~DGS~A~mCGNG~R 82 (296)
+|.|.++||...+..|.|+=
T Consensus 50 ~W~Itd~~g~~~eV~G~GVV 69 (126)
T 1xvs_A 50 RWLITDADGKQTVVEGDGVV 69 (126)
T ss_dssp EEEEEETTCCEEEEEEESBT
T ss_pred EEEEEECCCCEEECCCCCCC
T ss_conf 78999599977974477612
Done!