Query gi|254780710|ref|YP_003065123.1| diaminopimelate epimerase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 296
No_of_seqs 115 out of 2293
Neff 6.6
Searched_HMMs 23785
Date Tue May 31 17:41:49 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780710.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2otn_A Diaminopimelate epimera 100.0 0 0 580.8 29.1 275 2-282 18-305 (308)
2 2gke_A DAP epimerase, diaminop 100.0 0 0 577.4 29.1 270 6-281 1-274 (274)
3 3fve_A DAP epimerase, diaminop 100.0 0 0 551.9 26.5 262 6-288 2-287 (290)
4 3ejx_A DAP epimerase, diaminop 100.0 0 0 481.6 29.0 279 2-283 23-313 (317)
5 1u0k_A Gene product PA4716; sc 100.0 4.5E-31 1.9E-35 223.3 15.7 263 8-284 13-287 (288)
6 1ym5_A YHI9, hypothetical 32.6 100.0 1.4E-28 5.9E-33 206.8 16.1 266 4-283 3-296 (300)
7 3edn_A Phenazine biosynthesis 100.0 1.4E-26 6E-31 193.6 20.2 257 8-281 12-299 (299)
8 1xub_A Phenazine biosynthesis 99.9 3.2E-25 1.4E-29 184.7 18.0 257 7-281 29-298 (298)
9 1qya_A ORFB, hypothetical prot 99.9 8.5E-24 3.6E-28 175.3 15.1 261 7-282 20-306 (307)
10 2azp_A Hypothetical protein PA 99.4 3.4E-10 1.4E-14 85.7 20.2 267 5-290 5-313 (318)
11 1s7j_A Phenazine biosynthesis 99.1 2.7E-08 1.1E-12 73.2 19.2 242 8-281 11-260 (262)
12 1w61_A B-cell mitogen; racemas 99.1 9.4E-07 3.9E-11 63.0 25.7 266 4-285 44-383 (414)
13 1tm0_A Proline racemase; struc 98.6 2.3E-05 9.6E-10 53.8 18.2 266 3-285 4-326 (350)
14 3edn_A Phenazine biosynthesis 97.1 0.0067 2.8E-07 37.6 10.6 93 162-262 18-112 (299)
15 3g7k_A 3-methylitaconate isome 97.1 0.018 7.4E-07 34.8 23.5 273 1-287 1-380 (391)
16 1qya_A ORFB, hypothetical prot 96.5 0.031 1.3E-06 33.2 10.1 91 162-260 27-118 (307)
17 1xub_A Phenazine biosynthesis 96.5 0.026 1.1E-06 33.7 9.5 95 162-265 36-132 (298)
18 1s7j_A Phenazine biosynthesis 94.8 0.22 9.3E-06 27.6 12.1 93 162-263 17-110 (262)
19 2azp_A Hypothetical protein PA 94.2 0.29 1.2E-05 26.8 12.5 113 162-275 14-141 (318)
20 1u0k_A Gene product PA4716; sc 92.8 0.5 2.1E-05 25.2 10.2 92 162-261 19-113 (288)
21 2pw0_A PRPF methylaconitate is 91.0 0.78 3.3E-05 24.0 20.1 265 6-282 12-395 (397)
22 1sr8_A Cobalamin biosynthesis 79.3 1.5 6.2E-05 22.1 3.5 10 95-104 64-73 (298)
23 3fov_A UPF0102 protein RPA0323 27.4 26 0.0011 14.0 2.2 29 80-108 26-55 (134)
24 3f4k_A Putative methyltransfer 22.5 26 0.0011 14.0 1.2 14 76-91 54-67 (257)
25 1xvs_A Protein APAG; MCSG APC2 21.9 32 0.0013 13.3 1.6 19 63-81 50-68 (126)
No 1
>2otn_A Diaminopimelate epimerase; DAP, lysine metabolism, X-RAY, lanthionine, isomeras; 2.40A {Bacillus anthracis str}
Probab=100.00 E-value=0 Score=580.76 Aligned_cols=275 Identities=33% Similarity=0.549 Sum_probs=234.8
Q ss_pred CCCC--CEEEEECCCCCCEEEEECCCCCCCCC--HHHHH-HHCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCC
Q ss_conf 8754--11378517677389994778887888--88998-7203567143558998258888866899997178762123
Q gi|254780710|r 2 QSSM--VDFAKMEGIGNKILVIDMRGCHDNIT--SDAIN-ALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQS 76 (296)
Q Consensus 2 ~~~m--i~F~Kmhg~GNDFiiiD~~~~~~~~~--~~~i~-~~~~~~giG~Dgli~i~~~~~~~~d~~m~~fN~DGS~A~m 76 (296)
++.| ++|+||||+||||||+|.++...... +..++ .|.|++||||||||+|++++ .+|++|+|||+|||+|+|
T Consensus 18 ~~~m~~~~F~Kmhg~GNDFiiiD~~~~~~~~~~~~~~~~~lc~R~~GIGaDgll~i~~s~--~~d~~m~ifNaDGSeA~m 95 (308)
T 2otn_A 18 GSHMSQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSD--VAPVKMRMFNNDGSEGKS 95 (308)
T ss_dssp SCEEEEEEEEEEEETTEEEEEEETTTCCCCGGGHHHHHHHHHCTTTSCCCSEEEEEECCS--SSSEEEEEEETTSCEECC
T ss_pred CCCCCCCCEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEECC--CCCEEEEEEECCCCHHHC
T ss_conf 787762668987259984999978888798567899999876445684788899997177--888589999489986861
Q ss_pred CCCHHHHHHHHHHCC--CCCCEEEEEECCCCEEEEECCCC----EEEECCCCCCCCHHHCCCCCCCCCCCCCEEECCCCC
Q ss_conf 320332231110013--57640379835883799985774----277403687777776856565654344301105777
Q gi|254780710|r 77 CGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVN 150 (296)
Q Consensus 77 CGNG~Rc~a~yl~~~--~~~~~~~i~T~~g~~~~~~~~~~----~v~V~mG~p~~~~~~ip~~~~~~~~~~~~~~~~~~~ 150 (296)
||||+||+|+||+++ ..++.+.++|.+|.+.++...++ .++|+||.|.+.+.++|+....+...... ....
T Consensus 96 CGNG~Rcva~yl~~~~~~~~~~~~i~t~~g~~~~~~~~~~~~~~~~~v~mg~~~~~~~~i~~~~~~~~~~~~~---~~~~ 172 (308)
T 2otn_A 96 CGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKIDMGAPRLTRAEIPMLGEGETPFIRE---NFLY 172 (308)
T ss_dssp TTTTHHHHHHHHHHTTSCSSSEEEEEETTEEEEEEEEESSSSEEEEEEEEECCBCSGGGTTCCSSCCSSSEEE---EEEE
T ss_pred CCCHHHHHEEHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCEEEEEEECCCCEECCCCCCCCCCCCCCCCCC---CCCC
T ss_conf 6486875400131427767743689961772799999517946899972898572333354323345532222---2024
Q ss_pred CCEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCHHHHH
Q ss_conf 74021309995587427974255768688876310002332375555146799728872899980467876656323589
Q gi|254780710|r 151 HLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 (296)
Q Consensus 151 ~~~~~~~~~v~iGNPH~Vi~v~d~i~~~~l~~~g~~i~~~~~Fp~gvNV~fv~v~~~~~I~iRt~ERGvGeTlACGTGA~ 230 (296)
......+++|+|||||||+|++ +++.+++..+|+.|++|+.||+|+||+|++++++++|++||||||||||+|||||||
T Consensus 173 ~~~~~~~~~V~~GnPH~Vi~v~-~~~~~~l~~~g~~i~~~~~fp~g~NV~fv~~~~~~~i~vRt~ERGvGeTlaCGTGa~ 251 (308)
T 2otn_A 173 NNHRYAFTAVSMGNPHAVIFVD-DVEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGAC 251 (308)
T ss_dssp TTEEEEEEEEESSSEEEEEECS-CGGGSCTTTHHHHHHTCTTCTTCCEEEEEEEEETTEEEEEEECSSSCBCSCCHHHHH
T ss_pred CCCCEEEEEECCCCCEEEEEEC-CCCCCHHHHHCCHHCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCHHHHH
T ss_conf 7860457998169965999945-632011443173200554466654358999721342799996178885656467899
Q ss_pred HHHHHHHHHCCCC--CCEEEECCCCEEEEEEECCCEEEEEECEEEEEEEEEEEC
Q ss_conf 9999999817889--807999079579999958981999946289998899841
Q gi|254780710|r 231 ASVVASGCLHKTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 (296)
Q Consensus 231 Asa~~~~~~~~~~--~~v~V~~pGG~L~v~~~~~~~i~l~Gpa~~vf~G~~~i~ 282 (296)
|+|+++.++++.+ ++++|++|||.|.|+|.++++|+|+|||++||+|+|+..
T Consensus 252 Aaa~a~~~~~~~~~~~~v~V~~~GG~L~V~~~~~~~v~L~Gpa~~vf~G~~~~~ 305 (308)
T 2otn_A 252 AAVVASILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 305 (308)
T ss_dssp HHHHHHHHTTSSCTTCCEEEECSSCEEEEEECTTSCEEEEEECEEEEEEEEEEE
T ss_pred HHHHHHHHHCCCCCCCEEEEECCCCEEEEEEECCCCEEEEECCEEEEEEEEEEE
T ss_conf 999999984756789879999699779999937994999937599999999988
No 2
>2gke_A DAP epimerase, diaminopimelate epimerase; enzyme-inhibitor complex, covalently bound inhibitor, isomerase; HET: ZDP; 1.35A {Haemophilus influenzae} SCOP: d.21.1.1 d.21.1.1 PDB: 1gqz_A* 2gkj_A* 2q9h_A* 2q9j_A 1bwz_A
Probab=100.00 E-value=0 Score=577.36 Aligned_cols=270 Identities=35% Similarity=0.593 Sum_probs=241.4
Q ss_pred CEEEEECCCCCCEEEEECCCCCCCCCHHHHHHHCCC-CCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCHHHHH
Q ss_conf 113785176773899947788878888899872035-6714355899825888886689999717876212332033223
Q gi|254780710|r 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCV 84 (296)
Q Consensus 6 i~F~Kmhg~GNDFiiiD~~~~~~~~~~~~i~~~~~~-~giG~Dgli~i~~~~~~~~d~~m~~fN~DGS~A~mCGNG~Rc~ 84 (296)
|+|+||||+||||||+|.+.....++++.++++|+| +||||||||+|+++.++.+|++|+|||+|||+|+|||||+||+
T Consensus 1 m~F~K~~g~GNDFiiid~~~~~~~~~~~~i~~lc~R~~GIGaDgll~i~~~~~~~~d~~m~ifN~DGS~A~mCGNG~Rc~ 80 (274)
T 2gke_A 1 MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHYRIFNADGSEVSQCGNGARCF 80 (274)
T ss_dssp CEEEEEEETTEEEEEEECSSSCCCCCHHHHHHHHCTTTSCCCSEEEEEECCSSTTSSEEEEEEETTSCEESCCHHHHHHH
T ss_pred CEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCHHHCCCCHHHHH
T ss_conf 98999865997299997898867999999998636687837777999965789886479999979998565577789999
Q ss_pred HHHHHCC--CCCCEEEEEECCCCEEEEECCCCEEEECCCCCCCCHHHCCCCCCCCCCCCCEEECCCCCCCEECCEEEEEC
Q ss_conf 1110013--57640379835883799985774277403687777776856565654344301105777740213099955
Q gi|254780710|r 85 VRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM 162 (296)
Q Consensus 85 a~yl~~~--~~~~~~~i~T~~g~~~~~~~~~~~v~V~mG~p~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i 162 (296)
|+|++++ ..+..+.+.|..+.......++..|+|+|+.|.+.+..+|+.......... .. .......+++|++
T Consensus 81 a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~i~~~~~~~~~~~~-~~----~~~~~~~~~~v~~ 155 (274)
T 2gke_A 81 ARFVTLKGLTNKKDISVSTQKGNMVLTVKDDNQIRVNMGEPIWEPAKIPFTANKFEKNYI-LR----TDIQTVLCGAVSM 155 (274)
T ss_dssp HHHHHHTTSCCCSEEEEECSSCEEEEEECTTSCEEEECCCCBCCGGGTTCCCSSCCSSEE-EE----CSSCEEEEEEEES
T ss_pred HHHHHHHHCCCCEEEEEEECCCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEE-EE----CCCCEEEEEEEEC
T ss_conf 999876312653059999568735874036836999778732144324444454442203-30----3653078999934
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 87427974255768688876310002332375555146799728872899980467876656323589999999981788
Q gi|254780710|r 163 GNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 (296)
Q Consensus 163 GNPH~Vi~v~d~i~~~~l~~~g~~i~~~~~Fp~gvNV~fv~v~~~~~I~iRt~ERGvGeTlACGTGA~Asa~~~~~~~~~ 242 (296)
||||+|+|++ +++.+++..+|+.+++|+.||+++||+|+++.++++|++||||||||||+||||||||+|+++.+++++
T Consensus 156 GnPH~Vi~~~-~~~~~~l~~~g~~i~~~~~fp~~~Nv~fv~~~~~~~i~vrt~ERGvGeTlaCGTGA~A~a~~~~~~~~~ 234 (274)
T 2gke_A 156 GNPHCVVQVD-DIQTANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGLL 234 (274)
T ss_dssp SSEEEEEECS-CTTTSCHHHHHHHHHTCTTCTTCCEEEEEEEEETTEEEEEEEETTTEECSCCHHHHHHHHHHHHHTTSS
T ss_pred CCCCEEEEEC-CCCCCCHHHHCHHHHHCCCCCCCCCEEEEEEECCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 9984899966-855277878473552023323565316799905995999998457753205771089999999982889
Q ss_pred CCCEEEECCCCEEEEEEEC-CCEEEEEECEEEEEEEEEEE
Q ss_conf 9807999079579999958-98199994628999889984
Q gi|254780710|r 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 (296)
Q Consensus 243 ~~~v~V~~pGG~L~v~~~~-~~~i~l~Gpa~~vf~G~~~i 281 (296)
+++++|++|||.|.|+|+. +++|+|+|||++||+|+++|
T Consensus 235 ~~~v~V~~pGG~l~V~~~~~~~~i~l~G~a~~v~~G~i~l 274 (274)
T 2gke_A 235 NNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274 (274)
T ss_dssp CSEEEEEETTEEEEEEECCTTSCEEEEECCEEEEEEECCC
T ss_pred CCCEEEECCCCEEEEEEECCCCEEEEEECCEEEEEEEEEC
T ss_conf 9718999389789999988999899991429999999989
No 3
>3fve_A DAP epimerase, diaminopimelate epimerase; alpha/beta, amino-acid biosynthesis, cytoplasm, isomerase, lysine biosynthesis; 2.60A {Mycobacterium tuberculosis}
Probab=100.00 E-value=0 Score=551.89 Aligned_cols=262 Identities=23% Similarity=0.329 Sum_probs=216.2
Q ss_pred CEEEEECCCCCCEEEEECCCCCCCCCHHHHHHHCCC-CCCCCCEEEEEECC--------------CCCCCCEEEEEEECC
Q ss_conf 113785176773899947788878888899872035-67143558998258--------------888866899997178
Q gi|254780710|r 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDF--------------QDASVDAFIRIINCD 70 (296)
Q Consensus 6 i~F~Kmhg~GNDFiiiD~~~~~~~~~~~~i~~~~~~-~giG~Dgli~i~~~--------------~~~~~d~~m~~fN~D 70 (296)
|+|+||||+||||||+|.+..+..++++.++++|+| +||||||||+|+++ ....+||+|+|||+|
T Consensus 2 i~F~Kmhg~GNDFiiid~~~~~~~~~~~~i~~lc~R~~GiG~Dgll~i~~~~~~~~~~~~~~~~~~~~~~D~~m~ifN~D 81 (290)
T 3fve_A 2 MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVLDSLPEGVRVTDWYMDYRNAD 81 (290)
T ss_dssp EEEEEEESSSCEEEEEECTTCCSCCCHHHHHHHHCTTTSCCCSEEEEEEEHHHHHHTTSCSSCCTTCCTTSEEEEEEETT
T ss_pred CEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
T ss_conf 87997353897099997997768999999998627788857787999714664332222224556665655699998899
Q ss_pred CCCCCCCCCHHHHHHHHHHCC--CCCCEEEEEECCCCEEEEECC----CCEEEECCCCCCCCHHHCCCCCCCCCCCCCEE
Q ss_conf 762123320332231110013--576403798358837999857----74277403687777776856565654344301
Q gi|254780710|r 71 GSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENR----DGSISVDMGEPILDWKLIPLARSFDKMDRDRF 144 (296)
Q Consensus 71 GS~A~mCGNG~Rc~a~yl~~~--~~~~~~~i~T~~g~~~~~~~~----~~~v~V~mG~p~~~~~~ip~~~~~~~~~~~~~ 144 (296)
||+|+|||||+||+|+||+++ ..++++.++|.+|.+.+.... ...++|+|+.|.......+
T Consensus 82 GSeaemCGNG~Rcva~~l~~~~~~~~~~~~i~T~~G~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~------------- 148 (290)
T 3fve_A 82 GSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPVTCHHVEAAYADVSVDMGKANRLGAGEA------------- 148 (290)
T ss_dssp SCBCCTTCTTHHHHHHHHHHTTSCCCSEEEEECTTCCEEEEEEEECSSEEEEEEECCCCEEEEEEEB-------------
T ss_pred CCHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCC-------------
T ss_conf 8877667478999999999858873111665530462466751145544216853776531464212-------------
Q ss_pred ECCCCCCCEECCEEEEECCCCEEEEECCC-CCCHHHHHHHHH-CCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCC
Q ss_conf 10577774021309995587427974255-768688876310-0023323755551467997288728999804678766
Q gi|254780710|r 145 HIGPVNHLFLRNPFVVSMGNPHAIFFVED-DLYHYDLASFGN-LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222 (296)
Q Consensus 145 ~~~~~~~~~~~~~~~v~iGNPH~Vi~v~d-~i~~~~l~~~g~-~i~~~~~Fp~gvNV~fv~v~~~~~I~iRt~ERGvGeT 222 (296)
........+++|+|||||+|+|+++ +++.+++..+|. ++++|+.||+|+||+|++++++++|++||||||||||
T Consensus 149 ----~~~~~~~~~~~v~~GNPH~V~~~~~~~~~~~~~~~~g~~~~~~~~~fp~g~NV~fv~~~~~~~I~~rt~ERGvGeT 224 (290)
T 3fve_A 149 ----VVGGRRFHGLAVDVGNPHLACVDSQLTVDGLAALDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGET 224 (290)
T ss_dssp ----C-----CEEEEEESSSEEEEEEETTCCTTTTCSCCCC--CCBCTTTCTTCCEEEEEECCBTTEEEEEEEBTTTBSC
T ss_pred ----CCCCCCCCEEEECCCCCCEEEEECCCEECCHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCC
T ss_conf ----1001223059972589728998402000323344421641113224888644268997057832786540467877
Q ss_pred CCCHHHHHHHHHHHH-HHCCCCCCEEEECCCCEEEEEEECCCEEEEEECEEEEEEEEEEECCCCCCC
Q ss_conf 563235899999999-817889807999079579999958981999946289998899841320001
Q gi|254780710|r 223 AACGSAACASVVASG-CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288 (296)
Q Consensus 223 lACGTGA~Asa~~~~-~~~~~~~~v~V~~pGG~L~v~~~~~~~i~l~Gpa~~vf~G~~~i~~~~~~~ 288 (296)
+||||||||+|+++. ++++.+++++|++|||.|.|+|. +++++|+|||++||+|+| +.+|.+
T Consensus 225 lACGTGa~Aaa~a~~~~~~~~~~~v~V~~~GG~L~v~~~-~~~v~l~Gpa~~Vf~G~i---~~~~~~ 287 (290)
T 3fve_A 225 RSCGTGTVAAAVAALAAVGSPTGTLTVHVPGGEVVVTVT-DATSFLRGPSVLVARGDL---ADDWWN 287 (290)
T ss_dssp SCCHHHHHHHHHHHHHHTTCSSEEEEEEETTEEEEEEEC-SSCEEEEEEEEEEEEEEE---CHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEEEE-CCCEEEEECCEEEEEEEE---CHHHHH
T ss_conf 464278999999999976997975999958987999997-997999907799999999---999994
No 4
>3ejx_A DAP epimerase, diaminopimelate epimerase, chloroplastic; PLP-independenet amino acid racemase, aziridino-diaminopimelate, isomerase; HET: ZDP; 1.95A {Arabidopsis thaliana} PDB: 3ekm_A*
Probab=100.00 E-value=0 Score=481.57 Aligned_cols=279 Identities=33% Similarity=0.525 Sum_probs=229.5
Q ss_pred CCCCCEEEEECCCCCCEEEEECCCCC-CCCCHHHHHHHCCC-CCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 87541137851767738999477888-78888899872035-67143558998258888866899997178762123320
Q gi|254780710|r 2 QSSMVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGN 79 (296)
Q Consensus 2 ~~~mi~F~Kmhg~GNDFiiiD~~~~~-~~~~~~~i~~~~~~-~giG~Dgli~i~~~~~~~~d~~m~~fN~DGS~A~mCGN 79 (296)
++.||+|+||||+||||||+|.++.. ..++++.++++|+| +||||||||+|.|+. +.+||+|+|||+|||+|+||||
T Consensus 23 ~~~~~~F~K~~g~GNDFiiid~~~~~~~~~~~~~~~~lc~r~~GiGaDgll~i~ps~-~~aD~~~riFnpDGs~a~~CGn 101 (317)
T 3ejx_A 23 ETGVLHFVKYHGLGNDFILVDNRDSSEPKITQEQAAKLCDRNFGVGADGVIFAMPGV-NGTDYAMRIFNSDGSEPEMCGN 101 (317)
T ss_dssp --CEEEEEEEEETTEEEEEEECTTCSSCSSCHHHHHHHTCTTTSSCCSEEEEEEECS-TTCSEEEEEEETTSCCCSCCHH
T ss_pred CCCEEEEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCC-CCCCEEEEEECCCCCCCCCCCC
T ss_conf 577385888845998099997888866689999999863757796878899980688-8887799998799980103687
Q ss_pred HHHHHHHHHHCC--CCCCEEEEEE-CCCCEEEEECCCCEEEECCCCCCCCHHHCCCCCCCCCCCCCEEECCCCCCCEECC
Q ss_conf 332231110013--5764037983-5883799985774277403687777776856565654344301105777740213
Q gi|254780710|r 80 GMRCVVRFLTSR--MKRKSFTFET-IRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRN 156 (296)
Q Consensus 80 G~Rc~a~yl~~~--~~~~~~~i~T-~~g~~~~~~~~~~~v~V~mG~p~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (296)
|+||+++||++. ...+...+++ ..+.......+++..+|.|+.+...+..++.............. ..........
T Consensus 102 g~r~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~ 180 (317)
T 3ejx_A 102 GVRCFARFIAELENLQGKHSFTIHTGAGLIVPEIQDDGQVKVDMGTPILKAQDVPTKLSGNKGEAVVEA-ELVVDGVSWN 180 (317)
T ss_dssp HHHHHHHHHHHHTTCCSCCBCCEEETTEEEEEEECTTSCEEEECCCCBCCGGGTTCCSCCSBTTBCCSE-EEEETTEEEE
T ss_pred HHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEE-EEECCCCCCC
T ss_conf 288999999972267887158998067505789828981899824765552123332223443222002-5631786453
Q ss_pred EEEEECCCCEEEEECCCCCC------HHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCHHHHH
Q ss_conf 09995587427974255768------688876310002332375555146799728872899980467876656323589
Q gi|254780710|r 157 PFVVSMGNPHAIFFVEDDLY------HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 (296)
Q Consensus 157 ~~~v~iGNPH~Vi~v~d~i~------~~~l~~~g~~i~~~~~Fp~gvNV~fv~v~~~~~I~iRt~ERGvGeTlACGTGA~ 230 (296)
+.+|++||||+|++++ +.+ .+++.++|+.+++++.||.++|++++++.++..+++|+||||+|||+|||||||
T Consensus 181 ~~~V~~GnpH~Vv~v~-~~~~~~~~~~~dl~~lg~~i~~~~~f~~~~n~~~~~~~~~~~~r~r~~erGvgEt~aCGSGa~ 259 (317)
T 3ejx_A 181 VTCVSMGNPHCITFGK-KGGPNLKVDDLNLPEIGPKFEHHEMFPARTNTEFVEVLSRSHLKMRVWERGAGATLACGTGAC 259 (317)
T ss_dssp EEEEESSSEEEEESSB-TTCCCCCGGGSCHHHHHHHHHTCTTCTTCCEEEEEEEEETTEEEEEEEBTTTBSCSCCHHHHH
T ss_pred EEEEECCCCEEEEEEC-CCHHHCCCCCCCHHHHCCHHHHCCCCCCCCCCCCEEECCCCEEEEEECCCCCCCCCCCHHHHH
T ss_conf 4999648966999964-511111344578779581233032223545412203202555999985787524757336899
Q ss_pred HHHHHHHHHCCCCCCEEEECCCCEEEEEEE-CCCEEEEEECEEEEEEEEEEECC
Q ss_conf 999999981788980799907957999995-89819999462899988998413
Q gi|254780710|r 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIKT 283 (296)
Q Consensus 231 Asa~~~~~~~~~~~~v~V~~pGG~L~v~~~-~~~~i~l~Gpa~~vf~G~~~i~~ 283 (296)
|+|+++.++++.+.+++|.+|||.|.|+|+ ++++|+|+|||++||+|++.|.-
T Consensus 260 A~a~~~~~~g~~~~~~~V~~~GG~L~V~~~~~~~~v~l~G~A~~v~~G~i~l~~ 313 (317)
T 3ejx_A 260 ALVVAAVLEGRADRKCTVDLPGGPLEIEWKQEDNHIYMTGPAEAVFYGSALLHH 313 (317)
T ss_dssp HHHHHHHHTTSSCSEEEEEETTEEEEEEECTTTSCEEEEECCEEEEEEEEEC--
T ss_pred HHHHHHHHHCCCCCCEEEEECCCEEEEEEEECCCEEEEEECEEEEEEEEEEEEE
T ss_conf 999999981999961899958978999999089979999074999998999972
No 5
>1u0k_A Gene product PA4716; sctructural genomics, MCSG, protein structure initiative, structural genomics, PSI; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: d.21.1.2 d.21.1.2
Probab=99.97 E-value=4.5e-31 Score=223.27 Aligned_cols=263 Identities=17% Similarity=0.173 Sum_probs=183.5
Q ss_pred EEEECCCCCCEEEEECCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHH
Q ss_conf 37851767738999477888788888998720356714355899825888886689999717876212332033223111
Q gi|254780710|r 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF 87 (296)
Q Consensus 8 F~Kmhg~GNDFiiiD~~~~~~~~~~~~i~~~~~~~giG~Dgli~i~~~~~~~~d~~m~~fN~DGS~A~mCGNG~Rc~a~y 87 (296)
|++-+..||...|+-. ...++.+..+.++++.+. ---.||.|+.+ ..+++|+|||+|| |..|||+|++|++++
T Consensus 13 Ft~~~~~GNpaaVv~~---~~~l~~~~~q~iA~e~~~--seT~Fv~~~~~-~~~~~lr~Ftp~~-E~~~cGHatlaaa~~ 85 (288)
T 1u0k_A 13 FAERPLTGNGLAVFDD---ASALDDAAMQAWTRELRQ--FESIFLLPGDD-PRAFRARIFTLEE-ELPFAGHPLLGAAAL 85 (288)
T ss_dssp SCSSTTCSEEEEEESC---CTTCCHHHHHHHHHHHCC--SEEEEEEECSC-TTEEEEEEEESSC-BCCSCCTHHHHHHHH
T ss_pred CCCCCCCCCCEEEEEC---CCCCCHHHHHHHHHHHCC--CEEEEEECCCC-CCEEEEEEECCCC-CHHHCCCCHHHHHHH
T ss_conf 6599998865699988---999899999999998699--87999966888-7718999977997-342068528889998
Q ss_pred HHCC---CCCCEEEEEECCCCEEEEECC-CCEEEECCCCCCCCHHHCCCCCCCCCCCCCEEECCCCCCCEECCEEEEECC
Q ss_conf 0013---576403798358837999857-742774036877777768565656543443011057777402130999558
Q gi|254780710|r 88 LTSR---MKRKSFTFETIRGILVAKENR-DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG 163 (296)
Q Consensus 88 l~~~---~~~~~~~i~T~~g~~~~~~~~-~~~v~V~mG~p~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iG 163 (296)
|.+. .....+.++|..+........ +..+.+.+..+...+...+.....+.+. ..+.. .........+..+++|
T Consensus 86 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~v~~G 163 (288)
T 1u0k_A 86 LHHLRGGDNEQHWTLHLASKSVALRSVRAGSGFYAEMDQGRAEFGATPDAGTCRWFA-EAFSL-SANDLSGHPPRVVSTG 163 (288)
T ss_dssp HHHHHCCSSCEEEEEECSSCEEEEEEEEETTEEEEEEEEEECEECCCCCHHHHHHHH-HHTTC-CGGGBCSSCCEEEESS
T ss_pred HHHHCCCCCCCEEEEEECCCCEEEEEEECCCCEEEECCCCCCCCCCCCCCCCHHHHH-HHCCC-CHHHCCCCCCEEEECC
T ss_conf 865302578715899960454057776136410221246777556543345678887-64276-6122147781899669
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCEEEEEECCC-CCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 742797425576868887631000233237555514679972887289998046-7876656323589999999981788
Q gi|254780710|r 164 NPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER-GVGLTAACGSAACASVVASGCLHKT 242 (296)
Q Consensus 164 NPH~Vi~v~d~i~~~~l~~~g~~i~~~~~Fp~gvNV~fv~v~~~~~I~iRt~ER-GvGeTlACGTGA~Asa~~~~~~~~~ 242 (296)
|||+++++++ . .+... +.+..+..|++++|+.++.+.+++.+..|+||| |++||.||||++||.+.++.+.+..
T Consensus 164 ~~~lvv~v~~-~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~p~~Gv~EDpatGSa~~ala~~l~~~~~~ 238 (288)
T 1u0k_A 164 LPYLLLPVTA-E---ALGRA-RQVNDLQEALDKLGAAFVYLLDVDGREGRTWDNLGLVEDVATGSAAGPVAAYLVEYGLA 238 (288)
T ss_dssp SCEEEEEBCH-H---HHHTC-CCCSCCHHHHHHHTCSEEEEEETTTTEEECBCTTSCSBCSCCHHHHHHHHHHHHHTTSS
T ss_pred CCEEEEEECH-H---HHHHC-CCHHHHHHHCCCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 9789999767-8---76425-77188886302486799998316751541105778888998641358999999982788
Q ss_pred CC--CEEEECC-----CCEEEEEEECCCEEEEEECEEEEEEEEEEECCC
Q ss_conf 98--0799907-----957999995898199994628999889984132
Q gi|254780710|r 243 NR--AVSVKML-----GGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284 (296)
Q Consensus 243 ~~--~v~V~~p-----GG~L~v~~~~~~~i~l~Gpa~~vf~G~~~i~~~ 284 (296)
.. .+.+++. ||.|.+++..+++|+|+|+|..+++|++-+.++
T Consensus 239 ~~~~~~~~~QG~~~gr~g~l~v~~~~d~~V~i~G~a~~v~~G~l~~~~~ 287 (288)
T 1u0k_A 239 ARGEPFVLHQGRFLERPSRLDVQVATDGSVRVGGHVQLLARAELLTSAG 287 (288)
T ss_dssp CTTSCEEEEECGGGTCCEEEEEEECSSSEEEEEEEEEEEEEEEECSCC-
T ss_pred CCCEEEEEECCCCCCCCEEEEEEECCCCCEEEEEEEEEEEEEEEEEECC
T ss_conf 8880899982551389869999996899699998999999999995479
No 6
>1ym5_A YHI9, hypothetical 32.6 kDa protein in DAP2-SLT2 intergenic region; PHZF enzyme superfamily, double hot-DOG, structural genomics; 2.05A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.4e-28 Score=206.85 Aligned_cols=266 Identities=15% Similarity=0.194 Sum_probs=182.2
Q ss_pred CCCE------EEEECCCCCCEEEEECCC-CCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCC
Q ss_conf 5411------378517677389994778-887888889987203567143558998258888866899997178762123
Q gi|254780710|r 4 SMVD------FAKMEGIGNKILVIDMRG-CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQS 76 (296)
Q Consensus 4 ~mi~------F~Kmhg~GNDFiiiD~~~-~~~~~~~~~i~~~~~~~giG~Dgli~i~~~~~~~~d~~m~~fN~DGS~A~m 76 (296)
-||+ |++....||..-|+.... ....++.++.+.+++..+. --..||.++.++.+||+|+|||+||+. .+
T Consensus 3 ~~~p~~~vdaFt~~~~~GNpaaVv~~~~~~~~~l~~~~mq~IA~e~n~--sET~Fv~~~~~~~~d~~vR~Ftp~~E~-~~ 79 (300)
T 1ym5_A 3 LMVPFKQVDVFTEKPFMGNPVAVINFLEIDENEVSQEELQAIANWTNL--SETTFLFKPSDKKYDYKLRIFTPRSEL-PF 79 (300)
T ss_dssp EEEEEEEEEETCSSTTSSEEEEEEECTTSCGGGSCHHHHHHHHHHHTS--SCEEEEECCSSTTCSEEEEEECSSCEE-SC
T ss_pred EEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCC--CEEEEEECCCCCCCCEEEEEECCCCCC-CC
T ss_conf 363089999555999988584999856678579899999999998699--779999678888850899998899762-03
Q ss_pred CCCHHHHHHHHHHCC---CCCCEEEEEECCCCEEEEECCCCEEEECCCCCCCCHHHCCCCCCCCCCCCCEEECCCCCCCE
Q ss_conf 320332231110013---57640379835883799985774277403687777776856565654344301105777740
Q gi|254780710|r 77 CGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLF 153 (296)
Q Consensus 77 CGNG~Rc~a~yl~~~---~~~~~~~i~T~~g~~~~~~~~~~~v~V~mG~p~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~ 153 (296)
||+|+++.++++.+. .....+.+++..+....... +..+.+.+..|...+...+..... .... ....
T Consensus 80 cGH~tla~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~--~~~~ 149 (300)
T 1ym5_A 80 AGHPTIGSCKAFLEFTKNTTATSLVQECKIGAVPITIN-EGLISFKAPMADYESISSEMIADY-------EKAI--GLKF 149 (300)
T ss_dssp CHHHHHHHHHHHHHHTTCSCCSEEEEEETTEEEEEEEE-TTEEEEECSCCEEEECCHHHHHHH-------HHHH--TSCC
T ss_pred CCCCHHHHHHHHHHHCCCCCCCEEEEEEECCEEEEEEE-EEEEEEECCCCCCCCCCHHHHHHH-------HHHH--HCCC
T ss_conf 78627887546565335788738999950131688642-113664045555666671442003-------4442--0125
Q ss_pred ECCEEEEECCCCEEEEECCCCCCHH-----HHHHHHHCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCC--CCCCCH
Q ss_conf 2130999558742797425576868-----887631000233237555514679972887289998046787--665632
Q gi|254780710|r 154 LRNPFVVSMGNPHAIFFVEDDLYHY-----DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG--LTAACG 226 (296)
Q Consensus 154 ~~~~~~v~iGNPH~Vi~v~d~i~~~-----~l~~~g~~i~~~~~Fp~gvNV~fv~v~~~~~I~iRt~ERGvG--eTlACG 226 (296)
...+..+++|+||+|++++ +.+.. +...+....+.+..++..+++.+.+..++..+++|+|+|+.| |..+||
T Consensus 150 ~~~~~~v~~G~~~~vv~v~-~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~F~p~~Gi~EDpaTG 228 (300)
T 1ym5_A 150 IKPPALLHTGPEWIVALVE-DAETCFNANPNFAMLAHQTKQNDHVGIILAGPKKEAAIKNSYEMRAFAPVINVYEDPVCG 228 (300)
T ss_dssp SSCCEEEESSSEEEEEECS-CHHHHHHCCCCHHHHHHHHHHHTCCEEEEEEECTTCSSTTEEEEEEEEGGGTEEEESSCH
T ss_pred CCCEEEEECCCCEEEEEEC-CHHHHHHCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCC
T ss_conf 7880999459987999917-868743136797896555421466534999962035776069999741578863376632
Q ss_pred HHHHHHHHHHHHHCCCCCC--EEEEC-----CCCEEEEEEECC----CEEEEEECEEEEEEEEEEECC
Q ss_conf 3589999999981788980--79990-----795799999589----819999462899988998413
Q gi|254780710|r 227 SAACASVVASGCLHKTNRA--VSVKM-----LGGGLLIEWHDN----NHVFMTGEAKKEWEGKLDIKT 283 (296)
Q Consensus 227 TGA~Asa~~~~~~~~~~~~--v~V~~-----pGG~L~v~~~~~----~~i~l~Gpa~~vf~G~~~i~~ 283 (296)
|++||.+.+....+..+.. +.+.+ .||.|.++|..+ .+|+|+|+|..|++|++.|.-
T Consensus 229 Saa~ala~yl~~~~~~~~~~~~~~~QG~~~~R~g~l~v~~~~~~~~~~~V~i~G~a~~v~~G~l~l~~ 296 (300)
T 1ym5_A 229 SGSVALARYLQEVYKFEKTTDITISEGGRLKRNGLMLASIKKEADNSTSYYIAGHATTVIDGKIKVHH 296 (300)
T ss_dssp HHHHHHHHHHHHHHCCSSCEEEEEEECGGGTCCEEEEEEEEECTTSCEEEEEEECEEEEEEEEEEEC-
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEEEEEEECCCCCCEEEEEEEEEEEEEEEEEEEE
T ss_conf 66899999999735899747999974642589849999999769984269999269999999999987
No 7
>3edn_A Phenazine biosynthesis protein, PHZF family; diaminopimelate epimerase-like fold, alpha and beta protein class, structural genomics; HET: MSE; 1.50A {Bacillus anthracis}
Probab=99.95 E-value=1.4e-26 Score=193.63 Aligned_cols=257 Identities=16% Similarity=0.166 Sum_probs=167.8
Q ss_pred EEEECCCCCCEEEE-ECCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 37851767738999-47788878888899872035671435589982588888668999971787621233203322311
Q gi|254780710|r 8 FAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVR 86 (296)
Q Consensus 8 F~Kmhg~GNDFiii-D~~~~~~~~~~~~i~~~~~~~giG~Dgli~i~~~~~~~~d~~m~~fN~DGS~A~mCGNG~Rc~a~ 86 (296)
|++....||...|+ |. ..+++++.+.++++.+ .....||.|++ .+||+||||| ||+|..|||||+||+++
T Consensus 12 Ft~~~~~GNp~aVv~~~----~~l~~~~mq~iA~e~n--~seT~Fv~p~~--~ad~~~R~Ft-p~~E~~~CGH~tla~a~ 82 (299)
T 3edn_A 12 FTNKPNMGNPAGIVLDA----DGLTEEEMQRIAEKVG--FNETSFVLSSE--VADIRMRYFT-PGYEMDLCGHGTVGTIY 82 (299)
T ss_dssp SCSSTTSSEEEEEESCC----TTCCHHHHHHHHHHHC--SSCEEEEECCS--SSSEEEEEEC-SSCEESCCHHHHHHHHH
T ss_pred CCCCCCCCCCEEEEECC----CCCCHHHHHHHHHHHC--CCEEEEEECCC--CCCEEEEEEC-CCCEECCCCCCHHHHHH
T ss_conf 66999988746999889----9989999999999869--98899996688--8868999964-99631026884304989
Q ss_pred HHHCC---CCCCEEEEEECCCCEEEEECCC--CE--EEECCCCCCCCHHHCCCCCCCCCCCCCEEECCCCCCCEECCEEE
Q ss_conf 10013---5764037983588379998577--42--77403687777776856565654344301105777740213099
Q gi|254780710|r 87 FLTSR---MKRKSFTFETIRGILVAKENRD--GS--ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV 159 (296)
Q Consensus 87 yl~~~---~~~~~~~i~T~~g~~~~~~~~~--~~--v~V~mG~p~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (296)
||+++ .....+.++|..|.+.++...+ .. +...++.|.+.+...+......... ...... ........
T Consensus 83 ~l~~~g~~~~~~~i~~et~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~--~~~~~~~~ 157 (299)
T 3edn_A 83 ALRERGLLEEKASLTIETKAGILPIQIGVNENGETFIKMRQTAPQFKDFAGSKEELAHSIG---LEVNDL--DVSLPIVY 157 (299)
T ss_dssp HHHHTTCSCSCSEEEEEETTEEEEEEEEECTTSCEEEEEECCCCEEEECCSCHHHHHHHTT---CCGGGB--CTTSCCEE
T ss_pred HHHHHCCCCCCCEEEEEECCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHC---CCHHHC--CCCCCEEE
T ss_conf 9998277889966999955750688995378705787516788754443454355554415---651221--45665499
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEE---EC---CCCEEEEEECCC---CCCCCCCCHHHHH
Q ss_conf 95587427974255768688876310002332375555146799---72---887289998046---7876656323589
Q gi|254780710|r 160 VSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIAR---VT---SLESLDLRTWER---GVGLTAACGSAAC 230 (296)
Q Consensus 160 v~iGNPH~Vi~v~d~i~~~~l~~~g~~i~~~~~Fp~gvNV~fv~---v~---~~~~I~iRt~ER---GvGeTlACGTGA~ 230 (296)
+++|+||+++.+. +...|..+.+-++....++...++.++. .. .......|.|.+ |+.|..+|||++|
T Consensus 158 ~~~g~~~~~v~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~Ed~atGsa~~ 234 (299)
T 3edn_A 158 GSTGNWTVIVPVK---NLDVCERMKPNNEVFPSVLKEIPNASIHPICLETYDEKVHMHGRHFSSAYAGTIEDPVTGTASG 234 (299)
T ss_dssp EESSSEEEEEEBS---CHHHHHHCCCCGGGHHHHCSSSTTCEEEEEESCCSSTTCSEEECEECCTTSSCSEESSCHHHHH
T ss_pred EECCCCEEEECCC---CHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCHHHHH
T ss_conf 8468620210010---3555643276445656667526876348988622576541589997301377536747548899
Q ss_pred HHHHHHHHHCCCC--CC--EEEEC-----CCCEEEEEEECC-----CEEEEEECEEEEEEEEEEE
Q ss_conf 9999999817889--80--79990-----795799999589-----8199994628999889984
Q gi|254780710|r 231 ASVVASGCLHKTN--RA--VSVKM-----LGGGLLIEWHDN-----NHVFMTGEAKKEWEGKLDI 281 (296)
Q Consensus 231 Asa~~~~~~~~~~--~~--v~V~~-----pGG~L~v~~~~~-----~~i~l~Gpa~~vf~G~~~i 281 (296)
|.+.+....+... .. +.|++ +||.|.|+|..+ .+|+|+|+|..|++|++-|
T Consensus 235 ~la~~l~~~~~~~~~~~~~~~i~QG~~~gR~g~l~v~~~~~~~~~~~~V~v~G~av~v~~G~l~l 299 (299)
T 3edn_A 235 VMGAYYATYVEKDFDHEMELIVEQGQEIHKDGRVTVYVTKDVESEKLQIDIAGTAVYVKEFEVLI 299 (299)
T ss_dssp HHHHHHHHHTCCCCSSEEEEEEEECGGGTCCEEEEEEEECCTTCSSCEEEEEECEEEEEEEEEEC
T ss_pred HHHHHHHHHHCCCCCCCEEEEEECCEEECCCCEEEEEEEECCCCCCCEEEEEEEEEEEEEEEEEC
T ss_conf 99999998707676653589997752868993899999844778855699981299999999989
No 8
>1xub_A Phenazine biosynthesis protein PHZF; biosynthetic protein; 1.30A {Pseudomonas fluorescens} SCOP: d.21.1.2 d.21.1.2 PDB: 1u1w_A* 1u1v_A* 1u1x_A* 1xua_A* 1t6k_A
Probab=99.94 E-value=3.2e-25 Score=184.69 Aligned_cols=257 Identities=16% Similarity=0.130 Sum_probs=183.2
Q ss_pred EEEEECCCCCCEEEEECCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 13785176773899947788878888899872035671435589982588888668999971787621233203322311
Q gi|254780710|r 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVR 86 (296)
Q Consensus 7 ~F~Kmhg~GNDFiiiD~~~~~~~~~~~~i~~~~~~~giG~Dgli~i~~~~~~~~d~~m~~fN~DGS~A~mCGNG~Rc~a~ 86 (296)
-|++....||---|+-. ...++.++.+.+++..+. ---.||.++.+ ..+|+|||||++ +|..+||+|++|+++
T Consensus 29 aFt~~~f~GNpaaVv~~---~~~l~~~~mq~IA~e~n~--sET~Fv~~~~~-~~~~~lR~FTP~-~Ev~~CGHatlaaa~ 101 (298)
T 1xub_A 29 AFASVPLEGNPVAVFFD---ADDLPPAQMQRIAREMNL--SESTFVLKPRN-GGDALIRIFTPV-NELPFAGAPLLGTAI 101 (298)
T ss_dssp ETCSSTTSSEEEEEECS---GGGSCHHHHHHHHHHHCS--SCEEEEECCSS-SSSEEEEEECSS-CEESCCHHHHHHHHH
T ss_pred ECCCCCCCCCCEEEEEC---CCCCCHHHHHHHHHHHCC--CEEEEEECCCC-CCEEEEEEECCC-CCCCCCCCHHHHHHH
T ss_conf 64189999861599968---989999999999998699--66999855888-780799996798-603457843788887
Q ss_pred HHHCCCCCCEEEEEECCCCEEEEECC--CCEEEECCCCCCCCHHHCCCCCCCCCCCCCEEECCCCCCCEECCEEEEECCC
Q ss_conf 10013576403798358837999857--7427740368777777685656565434430110577774021309995587
Q gi|254780710|r 87 FLTSRMKRKSFTFETIRGILVAKENR--DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 (296)
Q Consensus 87 yl~~~~~~~~~~i~T~~g~~~~~~~~--~~~v~V~mG~p~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iGN 164 (296)
+|.++.......++|.+|.+.++... ...+...|..|...+..++. ... ....+.... .......+++|+
T Consensus 102 ~l~~~~~~~~~~~et~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~l~~~~----~~~~~~~~~~G~ 173 (298)
T 1xub_A 102 ALGAHTDNHRLYLETQMGTIAFELERQNGSVIAASMDQPIPTWTALGR--DAE--LLKALGISD----STFPIEIYHNGP 173 (298)
T ss_dssp HHHTTCCCSEEEEEETTEEEEEEEEEETTEEEEEEEECCCCEEEECSC--HHH--HHHHHTCSC----CSSCCEEEESSS
T ss_pred HHHHCCCCCCEEEEEEEEEEEEEEEEECCCEEEEECCCCCCCCCCCCC--HHH--HHHHHCCCC----CCCCEEEEECCC
T ss_conf 775115654139999742589999800560687505788886656575--688--876531345----555759997488
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 42797425576868887631000233237555514679972887289998046787665632358999999998178898
Q gi|254780710|r 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 (296)
Q Consensus 165 PH~Vi~v~d~i~~~~l~~~g~~i~~~~~Fp~gvNV~fv~v~~~~~I~iRt~ERGvGeTlACGTGA~Asa~~~~~~~~~~~ 244 (296)
||+++.++ +.+ .|..+.+-++....|+...++.+.....+-..++..+++|++|..||||++||.+.+..+.+..+.
T Consensus 174 ~~~iv~v~-~~~--~l~~l~pd~~~~~~~~~~~~~~~~~~~~~~~~R~F~p~~Gi~EDpaTGSaa~aLa~yl~~~g~~~~ 250 (298)
T 1xub_A 174 RHVFVGLP-SID--ALSALHPDHRALSNFHDMAINCFAGAGRRWRSRMFSPAYGVVEDAATGSAAGPLAIHLARHGQIEF 250 (298)
T ss_dssp EEEEEECS-SHH--HHHHCCCCHHHHTTSCSCEEEEEEEETTEEEEEEEBGGGTBSSCSCCHHHHHHHHHHHHHTTSSCT
T ss_pred CEEEEEEC-CHH--HHHHCCCCHHHHHCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 60599963-877--753137588986113551488732788546788721466888887642316999999998489888
Q ss_pred --CEEEEC-----CCCEEEEEEECCC----EEEEEECEEEEEEEEEEE
Q ss_conf --079990-----7957999995898----199994628999889984
Q gi|254780710|r 245 --AVSVKM-----LGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDI 281 (296)
Q Consensus 245 --~v~V~~-----pGG~L~v~~~~~~----~i~l~Gpa~~vf~G~~~i 281 (296)
.+.+.+ .+|.|.++|..++ .|++.|+|..+++|++.|
T Consensus 251 ~~~~~i~QG~~~gR~g~l~v~~~~~~~~~~~V~vgG~av~v~~G~i~L 298 (298)
T 1xub_A 251 GQPVEILQGVEIGRPSLMFAKAEGRAEQLTRVEVSGNGVTFGRGTIVL 298 (298)
T ss_dssp TCCEEEEECGGGTCCEEEEEEEEEETTEEEEEEEEEEEEEEEEEEECC
T ss_pred CEEEEEEECCCCCCCEEEEEEEECCCCCEEEEEEEEEEEEEEEEEEEC
T ss_conf 717999803316998699999981799641799980499999999989
No 9
>1qya_A ORFB, hypothetical protein YDDE; putative phenazine biosynthesis protein, epimerase, antibiotic biosynthesis protein, structural genomics; 2.00A {Escherichia coli} SCOP: d.21.1.2 d.21.1.2 PDB: 1sdj_A 1qy9_A
Probab=99.92 E-value=8.5e-24 Score=175.34 Aligned_cols=261 Identities=13% Similarity=0.115 Sum_probs=170.2
Q ss_pred EEEEECCCCCC-EEEEECCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCHHHHHH
Q ss_conf 13785176773-89994778887888889987203567143558998258888866899997178762123320332231
Q gi|254780710|r 7 DFAKMEGIGNK-ILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVV 85 (296)
Q Consensus 7 ~F~Kmhg~GND-FiiiD~~~~~~~~~~~~i~~~~~~~giG~Dgli~i~~~~~~~~d~~m~~fN~DGS~A~mCGNG~Rc~a 85 (296)
-|++-...||. .|++|. ..++.++.+.+++..+. ---.||.|+. ..||++|+||++ .|..+||+|++|.+
T Consensus 20 aFt~~~f~GNpaaVv~~~----~~l~~~~mq~IA~e~n~--sETaFv~~~~--~a~~~lR~FtP~-~Ev~~CGHatlaaa 90 (307)
T 1qya_A 20 AFTSQPFRGNSAGVVFPA----DNLSEAQMQLIARELGH--SETAFLLHSD--DSDVRIRYFTPT-VEVPICGHATVAAH 90 (307)
T ss_dssp ETCSSTTCSEEEEEEECC----TTCCHHHHHHHHHHHCC--SCEEEEECCS--SSSEEEEEECSS-SEECC--CHHHHHH
T ss_pred ECCCCCCCCCCEEEEECC----CCCCHHHHHHHHHHHCC--CEEEEEECCC--CCCEEEEEECCC-CHHHCCCCHHHHHH
T ss_conf 677999987645999889----89999999999998699--7799997788--885799996698-60212676088899
Q ss_pred HHHHCC--CCCCEEEEEECCCCEEEEEC---CCCEEEECCCCCCCCHHHCCCCCCCCCCCCCEEECCCCCCCEECCEEEE
Q ss_conf 110013--57640379835883799985---7742774036877777768565656543443011057777402130999
Q gi|254780710|r 86 RFLTSR--MKRKSFTFETIRGILVAKEN---RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160 (296)
Q Consensus 86 ~yl~~~--~~~~~~~i~T~~g~~~~~~~---~~~~v~V~mG~p~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 160 (296)
++|++. .......++|.+|....... ....+...++.|.+.+...+.... .....+.+..........+..+
T Consensus 91 ~~l~~~~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 167 (307)
T 1qya_A 91 YVRAKVLGLGNCTIWQTSLAGKHRVTIEKHNDDYRISLEQGTPGFEPPLEGETRA---AIINALHLTEDDILPGLPIQVA 167 (307)
T ss_dssp HHHHHHHTCCSEEEEEECC--CEEEEEEEETTEEEEEEECCCCEECCCBCTHHHH---HHHHHTTCCGGGBCTTCCBEEE
T ss_pred HHHHHHCCCCCCCEEEEECCCCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCHH---HHHHHHCCCHHHHCCCCCEEEE
T ss_conf 9876623667650444203662267886058824788616876557776643134---5554304544451257770999
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC----CCCCCEEEEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 558742797425576868887631000233237----5555146799728872899980467876656323589999999
Q gi|254780710|r 161 SMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMF----SEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 (296)
Q Consensus 161 ~iGNPH~Vi~v~d~i~~~~l~~~g~~i~~~~~F----p~gvNV~fv~v~~~~~I~iRt~ERGvGeTlACGTGA~Asa~~~ 236 (296)
++|+||+++.+. +.+. +..+.+.......+ ....++-|....++..+..|+|+++.|.+..|+||++++++++
T Consensus 168 ~~g~~~~lv~~~-~~~~--l~~~~pd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~f~p~~Gi~EDpaTGSa~~aLa~ 244 (307)
T 1qya_A 168 TTGHSKVMIPLK-PEVD--IDALSPDLNALTAISKKIGCNGFFPFQIRPGKNETDGRMFSPAIGIVEDPVTGNANGPMGA 244 (307)
T ss_dssp ESSSCEEEEEBC-TTSC--GGGCCCCHHHHHHHHHHHTCCCEEEEEECTTSSEEEECEEEGGGTEEEESSCHHHHHHHHH
T ss_pred EECCCEEEEEEC-CHHH--HHHCCCCHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf 806815899956-9899--8653878678875042378305899885266417999974266897364624687999999
Q ss_pred --HHHCCCCC-----CEEEEC-----CCCEEEEEEEC-C---CEEEEEECEEEEEEEEEEEC
Q ss_conf --98178898-----079990-----79579999958-9---81999946289998899841
Q gi|254780710|r 237 --GCLHKTNR-----AVSVKM-----LGGGLLIEWHD-N---NHVFMTGEAKKEWEGKLDIK 282 (296)
Q Consensus 237 --~~~~~~~~-----~v~V~~-----pGG~L~v~~~~-~---~~i~l~Gpa~~vf~G~~~i~ 282 (296)
.+.+.... .+.+++ .||.|.+++.. + .+|+|.|+|..|++|++.|.
T Consensus 245 yl~~~~~~~~~~~~~~~~~~QG~~~~R~g~l~v~~~~~~~~~~~V~v~G~av~v~~G~l~I~ 306 (307)
T 1qya_A 245 WLVHHNVLPHDGNVLRVKGHQGRALGRDGMIEVTVTIRDNQPEKVTISGTAVILFHAEWAIE 306 (307)
T ss_dssp HHHHTTCSCCCSSEEEEEEEECGGGTCCEEEEEEEEEETTEEEEEEEEECEEEEEEEECSSC
T ss_pred HHHHCCCCCCCCCEEEEEEEEEEEECCCEEEEEEEEECCCCCCEEEEEEEEEEEEEEEEEEE
T ss_conf 99971877777855899999879988986999999966999877999823999999999984
No 10
>2azp_A Hypothetical protein PA1268; PA1268,APC5861,sulfur SAD, structural genomics, PSI, protein structure initiative; 2.13A {Pseudomonas aeruginosa}
Probab=99.37 E-value=3.4e-10 Score=85.65 Aligned_cols=267 Identities=15% Similarity=0.104 Sum_probs=150.6
Q ss_pred CCEEEEECCCCCCE-EEEECCCC-CCCCCHHHHHHHCCC------------CCCC-CCEEEEEECCCCCCCCEEEEEEEC
Q ss_conf 41137851767738-99947788-878888899872035------------6714-355899825888886689999717
Q gi|254780710|r 5 MVDFAKMEGIGNKI-LVIDMRGC-HDNITSDAINALSTD------------DNTH-FDQIMLIHDFQDASVDAFIRIINC 69 (296)
Q Consensus 5 mi~F~Kmhg~GNDF-iiiD~~~~-~~~~~~~~i~~~~~~------------~giG-~Dgli~i~~~~~~~~d~~m~~fN~ 69 (296)
.|.-+-+|..||-. ||+|.... ......++.+.++++ +|.. -=+- ++.+++++.+||+++||.+
T Consensus 5 ~i~~vD~~t~GnP~~VV~~g~p~~~g~~~~e~mq~ia~e~~~set~fl~ePrG~~~~~~~-~~~~p~~~~ad~~vR~FTP 83 (318)
T 2azp_A 5 RIRIIDSHTGGEPTRLVIGGFPDLGQGDMAERRRLLGERHDAWRAACILEPRGSDVLVGA-LLCAPVDPEACAGVIFFNN 83 (318)
T ss_dssp EEEEEEEEETTEEEEEEEECSCCCCSSCHHHHHHHHHHHCHHHHHHHHSTTTSCTTCEEE-EEECCSSTTSSEEEEEECS
T ss_pred EEEEEEECCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCHHHHHHCCCCCCCCCCEEE-EECCCCCCCCCEEEEEECC
T ss_conf 989998358986347997288789999999999999976174758550077777753200-4549999677558999636
Q ss_pred CCCCCCCCCCHHHHHHHHHHCC--CCCCEEEEEECCCCEEEEECCCCEEEECCCCCCCCH-HHCCCCCCCCCCCCCEEEC
Q ss_conf 8762123320332231110013--576403798358837999857742774036877777-7685656565434430110
Q gi|254780710|r 70 DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW-KLIPLARSFDKMDRDRFHI 146 (296)
Q Consensus 70 DGS~A~mCGNG~Rc~a~yl~~~--~~~~~~~i~T~~g~~~~~~~~~~~v~V~mG~p~~~~-~~ip~~~~~~~~~~~~~~~ 146 (296)
++ |..|||.++-|.+++|.+. .....+.++|.+|++.++...+..+.... .|.+.. ...+... +.....
T Consensus 84 ~~-EvpfcGHaTigta~~L~e~G~~~~~~~~~et~~G~v~v~~~~~~~~~~~~-~p~~~~~~~~~~~~--~~~g~~---- 155 (318)
T 2azp_A 84 SG-YLGMCGHGTIGLVASLAHLGRIGPGVHRIETPVGEVEATLHEDGSVSVRN-VPAYRYRRQVSVEV--PGIGRV---- 155 (318)
T ss_dssp SS-BCSCCHHHHHHHHHHHHHTTSCCSEEEEEECTTCCEEEEECTTSCEEEEC-SCBEEEEEEEEEEE--TTTEEE----
T ss_pred CC-CCCCCCCCCEEEEEEHHHCCCCCCCCEEEEECCCEEEEEEEEEEEEEEEC-CCCCCCCCCCCCCC--HHCCCC----
T ss_conf 86-45655775101254031448844530578843521457766325788511-67643345643321--001662----
Q ss_pred CCCCCCEECCEEEEECCCCEEEEECCC-----CCCHHHHHHHHHCCC-----CCCCCCCCCC---EEEEEECCCCEEEEE
Q ss_conf 577774021309995587427974255-----768688876310002-----3323755551---467997288728999
Q gi|254780710|r 147 GPVNHLFLRNPFVVSMGNPHAIFFVED-----DLYHYDLASFGNLLA-----KHPMFSEGVN---LSIARVTSLESLDLR 213 (296)
Q Consensus 147 ~~~~~~~~~~~~~v~iGNPH~Vi~v~d-----~i~~~~l~~~g~~i~-----~~~~Fp~gvN---V~fv~v~~~~~I~iR 213 (296)
...+..|.|..++.... -.....+..+.+.++ .....+.+.. +.+..-.+....+.|
T Consensus 156 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 225 (318)
T 2azp_A 156 ----------SGDIAWGGNWFFLVAGHGQRLAGDNLDALTAYTVAVQQALDDQDIRGEDGGAIDHIELFADDPHADSRNF 225 (318)
T ss_dssp ----------EEEEEESSSEEEEEESCCCCCSTTCHHHHHHHHHHHHHHHHHTTCBCTTSCBCCEEEEEEEETTEEEEEE
T ss_pred ----------CCHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCEEEE
T ss_conf ----------1023226976999825563203567899976446689987640223776762578884378998527999
Q ss_pred ECCCCCC-CCCCCHHHHHHHHHHHHHHCCCCC--CEEEE-CCCCEEEEEE--E--CCC---EEEEEECEEEEEEEEEEEC
Q ss_conf 8046787-665632358999999998178898--07999-0795799999--5--898---1999946289998899841
Q gi|254780710|r 214 TWERGVG-LTAACGSAACASVVASGCLHKTNR--AVSVK-MLGGGLLIEW--H--DNN---HVFMTGEAKKEWEGKLDIK 282 (296)
Q Consensus 214 t~ERGvG-eTlACGTGA~Asa~~~~~~~~~~~--~v~V~-~pGG~L~v~~--~--~~~---~i~l~Gpa~~vf~G~~~i~ 282 (296)
++-.+.| .-..||++|+|.....+..++... ..... .-|+....+. . .++ .+..+|.|-..-++++-|.
T Consensus 226 ~f~p~~gi~EdP~tgsa~a~lA~l~~~g~l~~~~~~~~~s~~G~~f~~~v~~~~~~~~~~v~v~I~G~a~i~g~~~~~ld 305 (318)
T 2azp_A 226 VLCPGKAYDRSPCGTGTSAKLACLAADGKLLPGQPWRQASVIGSQFEGRYEWLDGQPGGPIVPTIRGRAHVSAEATLLLA 305 (318)
T ss_dssp EECTTSCBCSSCCHHHHHHHHHHHHHTTSSCTTCCEEEECTTSCEEEEEEEEGGGCTTSCEEEEEEECEEEEEEEEEEEC
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCEEEEEEEEEECCCCEEEEEEEEEEEEEEEEEEEEC
T ss_conf 99838966658853678999999997598889985999963389579999999814897799999889999998999988
Q ss_pred CCCCCCCC
Q ss_conf 32000148
Q gi|254780710|r 283 TGKWIKKN 290 (296)
Q Consensus 283 ~~~~~~~~ 290 (296)
..+=.+.+
T Consensus 306 ~~Dp~~~G 313 (318)
T 2azp_A 306 DDDPFAWG 313 (318)
T ss_dssp TTCTTTTC
T ss_pred CCCCCCCC
T ss_conf 99998777
No 11
>1s7j_A Phenazine biosynthesis protein PHZF family; bacteria, structural genomics, PSI, protein structure initiative; 2.30A {Enterococcus faecalis V583} SCOP: d.21.1.2
Probab=99.12 E-value=2.7e-08 Score=73.17 Aligned_cols=242 Identities=17% Similarity=0.174 Sum_probs=139.9
Q ss_pred EEEECCCCCCEEEE-ECCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 37851767738999-47788878888899872035671435589982588888668999971787621233203322311
Q gi|254780710|r 8 FAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVR 86 (296)
Q Consensus 8 F~Kmhg~GNDFiii-D~~~~~~~~~~~~i~~~~~~~giG~Dgli~i~~~~~~~~d~~m~~fN~DGS~A~mCGNG~Rc~a~ 86 (296)
|+.=...||-=-|+ |. ..++.++.+.+++..+. ---.||.++ ..++++|||.+.+ |-.+||-++-..++
T Consensus 11 Ft~~~f~GNpaaVv~~~----~~ls~~~MQ~IA~e~n~--sET~Fv~~~---~~~~~vR~FTP~~-Ev~fcGH~Tlgaa~ 80 (262)
T 1s7j_A 11 FAEEVFKGNPAAVYVLE----KWLPEAVMQNIAIENNL--SETAFTVKE---GQSYALRWFTPER-EIDLCGHATLATAF 80 (262)
T ss_dssp TCSSTTSSEEEEEEECS----SCCCHHHHHHHHHHHCC--SCEEEEEEE---TTEEEEEEECSSS-EESCCHHHHHHHHH
T ss_pred CCCCCCCCCEEEEEECC----CCCCHHHHHHHHHHHCC--CCEEEECCC---CCCEEEEEECCCC-CCCCCCCCHHHHHH
T ss_conf 76999997347999889----89899999999998799--945998446---7731689972665-30235670577899
Q ss_pred HHHCCC--CCCEEEEEECCCCEEEEECCCCEEEECCCCCCCCHHHCCCCCCCCCCCCCEEECCCCCCCEECCEEEEECCC
Q ss_conf 100135--764037983588379998577427740368777777685656565434430110577774021309995587
Q gi|254780710|r 87 FLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 (296)
Q Consensus 87 yl~~~~--~~~~~~i~T~~g~~~~~~~~~~~v~V~mG~p~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iGN 164 (296)
+|.+.. ........+..+........+ ........+.. +..+.. +.. ...... ....+..|.
T Consensus 81 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~---~~~----~~~~~~------~~~~~~~~~ 144 (262)
T 1s7j_A 81 VLFNYYSVAEETLHFTSQSGPLAVTKKEE-YYYLDFPYILP--ERIPIL---PEY----EAALGT------KIYEAYLGR 144 (262)
T ss_dssp HHHHHSCCCSSEEEEEETTEEEEEEEETT-EEEEEEECCCC--EECCCC---HHH----HHHHTS------CCSEEEESS
T ss_pred HHHHHCCCCCEEEEEEEECCCEEEEEECC-CCCCCCCCCCC--CCCCCC---HHH----HHHCCC------CCEEEECCC
T ss_conf 99973798750699985034122243035-32122355663--235786---667----761367------717986277
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCEEEEEECCC--CCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 42797425576868887631000233237555514679972887289998046--7876656323589999999981788
Q gi|254780710|r 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER--GVGLTAACGSAACASVVASGCLHKT 242 (296)
Q Consensus 165 PH~Vi~v~d~i~~~~l~~~g~~i~~~~~Fp~gvNV~fv~v~~~~~I~iRt~ER--GvGeTlACGTGA~Asa~~~~~~~~~ 242 (296)
.+.++.. + ...+..+-+-.........+..|-+....++..+..|.|=- |+.|=-||||++||.+.+......
T Consensus 145 ~~~~~~~--~--~~~l~~~~pd~~~l~~l~~~~gv~~~~~~~~~~~~~R~FaP~~Gi~EDpaTGSa~~~La~yl~~~~~- 219 (262)
T 1s7j_A 145 DLFFVLK--D--EETVAKITPDFSALKALDLGVGVIVTASGDSVDFVSRTFFPKLRINEDPVCGSAHANLIPYWGKRLN- 219 (262)
T ss_dssp SEEEECS--C--HHHHHHCCCCHHHHHHCSSCSSEEEEEECSSSSEEEEEEEGGGTEEEESCCSTTHHHHHHHHHHHHT-
T ss_pred CCCEECC--C--HHHHHHCCCCHHHHHHCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCC-
T ss_conf 5305416--8--8898654788789974587737999902897107998413457998856523667879999986369-
Q ss_pred CCCEEEEC---CCCEEEEEEECCCEEEEEECEEEEEEEEEEE
Q ss_conf 98079990---7957999995898199994628999889984
Q gi|254780710|r 243 NRAVSVKM---LGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 (296)
Q Consensus 243 ~~~v~V~~---pGG~L~v~~~~~~~i~l~Gpa~~vf~G~~~i 281 (296)
...+...+ .+|.|.+++. ++.|++.|.|..+.+|++.|
T Consensus 220 ~~~~~~~q~~~R~~~l~v~~~-~~~V~vgG~av~v~~G~l~l 260 (262)
T 1s7j_A 220 QTTLSAYQVSPRGGFLTCEVK-ENRVIIGGTAKLFAKGEAYL 260 (262)
T ss_dssp CSEEEEEECSSSCCEEEEEEE-TTEEEEEECEEEEEEEEEEC
T ss_pred CCEEEEEEEECCCCEEEEEEE-CCEEEEEEEEEEEEEEEEEE
T ss_conf 836999999789939999998-99999975999999999992
No 12
>1w61_A B-cell mitogen; racemase, racemase pyridoxal phosphate-independent, stereo inversion, acid/base catalysis, homodimer, alpha/beta domains; 2.1A {Trypanosoma cruzi} PDB: 1w62_A
Probab=99.08 E-value=9.4e-07 Score=62.99 Aligned_cols=266 Identities=13% Similarity=0.099 Sum_probs=147.8
Q ss_pred CCCEEEEECCCCCCEEEE-ECCCCCCCCCHHHH------------HHHCC-CCCC-CCCEEEEEECCCCCCCCEEEEEEE
Q ss_conf 541137851767738999-47788878888899------------87203-5671-435589982588888668999971
Q gi|254780710|r 4 SMVDFAKMEGIGNKILVI-DMRGCHDNITSDAI------------NALST-DDNT-HFDQIMLIHDFQDASVDAFIRIIN 68 (296)
Q Consensus 4 ~mi~F~Kmhg~GNDFiii-D~~~~~~~~~~~~i------------~~~~~-~~gi-G~Dgli~i~~~~~~~~d~~m~~fN 68 (296)
.||.-.-||..|.=+=|| +.......-+-... +.|+. -+|- .-=|-|+ .||.++.+|+-+.|++
T Consensus 44 ~~i~~VD~HT~GEP~RIV~~G~p~l~G~T~~Ekr~~~~~~~D~lR~~Lm~EPRGh~~M~Gail-vpP~~p~Ad~Gvifm~ 122 (414)
T 1w61_A 44 KSFTCIDMHTEGEAARIVTSGLPHIPGSNMAEKKAYLQENMDYLRRGIMLEPRGHDDMFGAFL-FDPIEEGADLGIVFMD 122 (414)
T ss_dssp EEEEEEEEEETTEEEEEEEECCCCCCCSSHHHHHHHHHHHCHHHHHHHHSBTTSCTTCEEEEE-ECCCSTTCSEEEEEEE
T ss_pred CEEEEEECCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE-CCCCCCCCCEEEEEEC
T ss_conf 407899756898874799748789999999999999986068999997468988875267896-0899977778899981
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCC--C------CCEEEEEECCCCEEEEEC-CCC---E-EEECC-CCCCCCHH-HCCCC
Q ss_conf 787621233203322311100135--7------640379835883799985-774---2-77403-68777777-68565
Q gi|254780710|r 69 CDGSEVQSCGNGMRCVVRFLTSRM--K------RKSFTFETIRGILVAKEN-RDG---S-ISVDM-GEPILDWK-LIPLA 133 (296)
Q Consensus 69 ~DGS~A~mCGNG~Rc~a~yl~~~~--~------~~~~~i~T~~g~~~~~~~-~~~---~-v~V~m-G~p~~~~~-~ip~~ 133 (296)
++|.. .|||.|+-|++.+|.+.- . ...+.|+|.+|++.++.. .++ . .+|.+ -.|+|... ++++.
T Consensus 123 ~~Gy~-~MCGH~tI~v~t~lve~G~V~~~~~~t~~~v~ietPaGlV~a~~~~~~G~~~~v~~Vsf~nVPSF~~~~d~~v~ 201 (414)
T 1w61_A 123 TGGYL-NMCGHNSIAAVTAAVETGIVSVPAKATNVPVVLDTPAGLVRGTAHLQSGTESEVSNASIINVPSFLYQQDVVVV 201 (414)
T ss_dssp SSCCC-SCCHHHHHHHHHHHHHTTSSCCCTTCSEEEEEEEETTEEEEEEEEECTTCSSCEEEEEEECSCBEEEEEEEEEE
T ss_pred CCCCC-CCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEEEEEEECCCCCEEEEEEEEEECHHHHHCCCEEE
T ss_conf 78666-54363388999999986984478887630489856825899999996893020457999976417856397697
Q ss_pred CCCCCCCCCEEECCCCCCCEECCEEEEECCCCEEEEECCC---CC---CHHHHHHHHHCCC---------CCCCCCCCCC
Q ss_conf 6565434430110577774021309995587427974255---76---8688876310002---------3323755551
Q gi|254780710|r 134 RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED---DL---YHYDLASFGNLLA---------KHPMFSEGVN 198 (296)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~iGNPH~Vi~v~d---~i---~~~~l~~~g~~i~---------~~~~Fp~gvN 198 (296)
..........-.+.-||-.+++-.++ ++ +.-+|..+|..|+ .||..|+.-.
T Consensus 202 --------------vp~~~G~V~vDiayGG~fYaiVda~~lGl~l~~~n~~~L~~~g~~I~~a~~~~~~~~HP~~~~i~~ 267 (414)
T 1w61_A 202 --------------LPKPYGEVRVDIAFGGNFFAIVPAEQLGIDISVQNLSRLQEAGELLRTEINRSVKVQHPQLPHINT 267 (414)
T ss_dssp --------------CCTTTCEEEEEEEESSSEEEEEEGGGGTCCSSSTTHHHHHHHHHHHHHHHHHHCCCCCSSCTTCCS
T ss_pred --------------CCCCCCEEEEEEEECCEEEEEECHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf --------------578744289999855647999843562876580129999999999999998527543877777771
Q ss_pred EEEEEECCC------CEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCC--CCEEEECCCCEE-EEEEE------C--
Q ss_conf 467997288------728999804678766563235899999999817889--807999079579-99995------8--
Q gi|254780710|r 199 LSIARVTSL------ESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN--RAVSVKMLGGGL-LIEWH------D-- 261 (296)
Q Consensus 199 V~fv~v~~~------~~I~iRt~ERGvGeTlACGTGA~Asa~~~~~~~~~~--~~v~V~~pGG~L-~v~~~------~-- 261 (296)
+.++...++ ..-.+-+|.-|.=----||||.+|-.+.++..|++. .+...++.=|.. .-++. +
T Consensus 268 i~~v~~~g~~~~~~~~~rn~vv~~~g~iDRSPcGTGTSARlA~l~akG~L~~Ge~~~~eSIiGS~F~g~i~~~~~~g~~~ 347 (414)
T 1w61_A 268 VDCVEIYGPPTNPEANYKNVVIFGNRQADRSPCGTGTSAKMATLYAKGQLRIGETFVYESILGSLFQGRVLGEERIPGVK 347 (414)
T ss_dssp EEEEEEEECCSSTTCSEEEEEEETTTEECSSCCHHHHHHHHHHHHHTTCCCTTCCEEEEETTSCEEEEEEEEEEEEETCC
T ss_pred EEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEEEEEEEEECCCC
T ss_conf 46999957888888773599997999760598717689999999977997899927998425782799997788605633
Q ss_pred --------CCE----EEEEECEEEEEEEEEEECCCC
Q ss_conf --------981----999946289998899841320
Q gi|254780710|r 262 --------NNH----VFMTGEAKKEWEGKLDIKTGK 285 (296)
Q Consensus 262 --------~~~----i~l~Gpa~~vf~G~~~i~~~~ 285 (296)
.+. ...+|.|-+.-+.++-+...+
T Consensus 348 ~~~~~~~~~g~~AVip~I~G~A~itG~~~f~~d~~D 383 (414)
T 1w61_A 348 VPVTKDAEEGMLVVTAEITGKAFIMGFNTMLFDPTD 383 (414)
T ss_dssp CTTCCTTSSEEEEEEEEEEECEEEEEEEEEEECTTC
T ss_pred CCCCCCCCCCCCEEEEEEEEEEEEEEEEEEEECCCC
T ss_conf 332123457863699999999999998899987999
No 13
>1tm0_A Proline racemase; structural genomics, alpha-beta protein THAT resembles double-beta barrel; 2.80A {Brucella melitensis 16M} SCOP: d.21.1.3
Probab=98.55 E-value=2.3e-05 Score=53.84 Aligned_cols=266 Identities=14% Similarity=0.090 Sum_probs=139.3
Q ss_pred CCCCEEEEECCCCCCEEEE-ECCCCCCCCCHHHH-----------HHHCC-CCCC-CCCEEEEEECCCCCCCCEEEEEEE
Q ss_conf 7541137851767738999-47788878888899-----------87203-5671-435589982588888668999971
Q gi|254780710|r 3 SSMVDFAKMEGIGNKILVI-DMRGCHDNITSDAI-----------NALST-DDNT-HFDQIMLIHDFQDASVDAFIRIIN 68 (296)
Q Consensus 3 ~~mi~F~Kmhg~GNDFiii-D~~~~~~~~~~~~i-----------~~~~~-~~gi-G~Dgli~i~~~~~~~~d~~m~~fN 68 (296)
+.||+-.-||..|+=+=|| ........-+-... +.|.. -+|- .-=|-++ .||.++.+|+-+-|++
T Consensus 4 ~~~i~~iD~Ht~GEP~RIV~~G~p~~~G~t~~ek~~~~~~~D~lR~~Lm~EPRGh~~M~Gall-~pp~~~~Ad~Gvif~~ 82 (350)
T 1tm0_A 4 TKVIHIVGCHAEGEVGDVIVGGVAPPPGETVWEQSRFIANDETLRNFVLNKPRGGVFRHVNLL-VPPKDPRAQMGFIIME 82 (350)
T ss_dssp SCCEEEEEEEETTEECEEEEESCCCCSSSSHHHHHHHHHHHCHHHHHHHSTTTSCSSCCEEEE-ECCCSSSCSEEEECCC
T ss_pred CCEEEEEECCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE-ECCCCCCCCEEEEEEC
T ss_conf 767999977789887379962888999989999999987403898997458998874588998-1899988767899974
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCC--C----CCCEEEEEECCCCEEEEEC-CCC-EEEECC-CCCCCCHH-HCCCCCCCCC
Q ss_conf 78762123320332231110013--5----7640379835883799985-774-277403-68777777-6856565654
Q gi|254780710|r 69 CDGSEVQSCGNGMRCVVRFLTSR--M----KRKSFTFETIRGILVAKEN-RDG-SISVDM-GEPILDWK-LIPLARSFDK 138 (296)
Q Consensus 69 ~DGS~A~mCGNG~Rc~a~yl~~~--~----~~~~~~i~T~~g~~~~~~~-~~~-~v~V~m-G~p~~~~~-~ip~~~~~~~ 138 (296)
++|-. .|||-|+=|++.+|.+. . +...+.++|.+|++.+... .++ -.+|.+ -.|+|... ++++..+
T Consensus 83 ~~Gy~-~MCGh~tI~~~t~lve~G~v~~~~p~t~v~ietPaGlV~a~~~~~~gkv~~V~f~nVpSf~~~~d~~v~vp--- 158 (350)
T 1tm0_A 83 PADTP-PMSGSNSICVSTVLLDSGIIAMQEPVTHMVLEAPGGIIEVEAECRNGKAERISVRNVPSFADRLDAPLDVT--- 158 (350)
T ss_dssp SSCCC-SCCHHHHHHHHHHHHHHTSSCCCSSEEEEEEECSSCEEEEEEEECSSSEEEEEEECCCBEECCCSEEEECS---
T ss_pred CCCCC-CCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCEEEEEEEEECCHHHHCCCEEECC---
T ss_conf 77567-87743599999999985984578993388985798679999998599446999970055587589589868---
Q ss_pred CCCCEEECCCCCCCEECCEEEEECCCCEEEEECCC---CCC---HHHHHHHHHCCCCC-----CC-CCC--CCCEEEEEE
Q ss_conf 34430110577774021309995587427974255---768---68887631000233-----23-755--551467997
Q gi|254780710|r 139 MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED---DLY---HYDLASFGNLLAKH-----PM-FSE--GVNLSIARV 204 (296)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~v~iGNPH~Vi~v~d---~i~---~~~l~~~g~~i~~~-----~~-Fp~--gvNV~fv~v 204 (296)
... ....-.+.=||--+++-.++ ++. .-+|..+|..|+.. +. -|+ -..+.++++
T Consensus 159 -----------~~G-~V~vDiayGG~fYaiVda~~lgl~l~~~~~~~L~~~g~~ik~a~~~~~~~~HP~~~~~~i~~~~~ 226 (350)
T 1tm0_A 159 -----------GLG-TIMVDTAYGGDSFVIVDAAQIGMKIEPGQARELAEIGVKITKAANEQLGFRHPERDWRHISFCQI 226 (350)
T ss_dssp -----------SSS-EEEEEEEESSSEEEEEEGGGTC---CHHHHHHHHHHHHHHHCC------CCBTTBSCCSCCEEEE
T ss_pred -----------CCC-CEEEEEEECCEEEEEEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEE
T ss_conf -----------987-37988872661899984378256447436999999999999999860885689998564999997
Q ss_pred CCC-----CEEEEE---ECCCCCCCCCCCHHHHHHHHHHHHHHCCCC--CCEEEECCCCEE-EEEEE---C-CC----EE
Q ss_conf 288-----728999---804678766563235899999999817889--807999079579-99995---8-98----19
Q gi|254780710|r 205 TSL-----ESLDLR---TWERGVGLTAACGSAACASVVASGCLHKTN--RAVSVKMLGGGL-LIEWH---D-NN----HV 265 (296)
Q Consensus 205 ~~~-----~~I~iR---t~ERGvGeTlACGTGA~Asa~~~~~~~~~~--~~v~V~~pGG~L-~v~~~---~-~~----~i 265 (296)
.++ +...-| +|--|.=----||||.+|-.+..+..|++. .+...++.=|.. +.++. + .+ -.
T Consensus 227 ~~~~~~~~~~~~~rn~vv~~~g~vDRSPcGTGTSARlA~l~akG~l~~Ge~~~~eSIiGs~F~g~i~~~~~~g~~~AVip 306 (350)
T 1tm0_A 227 TEPVTREGDVLTGVNTVAIRPAKFDRSPTGTGCSARMAVLHAKGQMKAGERFIGKSVLGTEFHCRLDKVLELGGKPAISP 306 (350)
T ss_dssp ECCCEESSSEEEECEEC----------CCHHHHHHHHHHHHHTTSCCTTCEEEECCC--CCEEEEEEEEEEETTEEEEEE
T ss_pred CCCCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEEEEEEEECCCCEEEE
T ss_conf 68887888752013678768885415898502999999999759977998399997137819999999989899487999
Q ss_pred EEEECEEEEEEEEEEECCCC
Q ss_conf 99946289998899841320
Q gi|254780710|r 266 FMTGEAKKEWEGKLDIKTGK 285 (296)
Q Consensus 266 ~l~Gpa~~vf~G~~~i~~~~ 285 (296)
..+|.|-..-+.++-+...+
T Consensus 307 ~I~G~A~itG~~~f~id~~D 326 (350)
T 1tm0_A 307 IISGRAWVTGTSQLMLDPSD 326 (350)
T ss_dssp EEEECEEEEEEEEECCCTTC
T ss_pred EEEEEEEEEEEEEEEECCCC
T ss_conf 99999999998899977999
No 14
>3edn_A Phenazine biosynthesis protein, PHZF family; diaminopimelate epimerase-like fold, alpha and beta protein class, structural genomics; HET: MSE; 1.50A {Bacillus anthracis}
Probab=97.13 E-value=0.0067 Score=37.58 Aligned_cols=93 Identities=19% Similarity=0.276 Sum_probs=71.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 58742797425576868887631000233237555514679972887289998046787665632358999999998178
Q gi|254780710|r 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 (296)
Q Consensus 162 iGNPH~Vi~v~d~i~~~~l~~~g~~i~~~~~Fp~gvNV~fv~v~~~~~I~iRt~ERGvGeTlACGTGA~Asa~~~~~~~~ 241 (296)
.|||=+|++..+.+....+..+++.+... + .-|+.-.++...++|.|==| +|---||-|+.|++.+....+.
T Consensus 18 ~GNp~aVv~~~~~l~~~~mq~iA~e~n~s----e---T~Fv~p~~~ad~~~R~Ftp~-~E~~~CGH~tla~a~~l~~~g~ 89 (299)
T 3edn_A 18 MGNPAGIVLDADGLTEEEMQRIAEKVGFN----E---TSFVLSSEVADIRMRYFTPG-YEMDLCGHGTVGTIYALRERGL 89 (299)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHHHCSS----C---EEEEECCSSSSEEEEEECSS-CEESCCHHHHHHHHHHHHHTTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCC----E---EEEEECCCCCCEEEEEECCC-CEECCCCCCHHHHHHHHHHHCC
T ss_conf 88746999889998999999999986998----8---99996688886899996499-6310268843049899998277
Q ss_pred CC--CCEEEECCCCEEEEEEECC
Q ss_conf 89--8079990795799999589
Q gi|254780710|r 242 TN--RAVSVKMLGGGLLIEWHDN 262 (296)
Q Consensus 242 ~~--~~v~V~~pGG~L~v~~~~~ 262 (296)
.. ..+++++..|.+.+++..+
T Consensus 90 ~~~~~~i~~et~~G~~~~~~~~~ 112 (299)
T 3edn_A 90 LEEKASLTIETKAGILPIQIGVN 112 (299)
T ss_dssp SCSCSEEEEEETTEEEEEEEEEC
T ss_pred CCCCCEEEEEECCCEEEEEEECC
T ss_conf 88996699995575068899537
No 15
>3g7k_A 3-methylitaconate isomerase; DAPF family fold, closed conformation, open conformation; 2.70A {Eubacterium barkeri}
Probab=97.08 E-value=0.018 Score=34.82 Aligned_cols=273 Identities=17% Similarity=0.159 Sum_probs=143.9
Q ss_pred CCCCC-CEEEEECCCCCCEEEEECCCCCCCCCH---HHHHHHC---CC--CCCCC-----CEEEEEECCCCCCCCEEEEE
Q ss_conf 98754-113785176773899947788878888---8998720---35--67143-----55899825888886689999
Q gi|254780710|r 1 MQSSM-VDFAKMEGIGNKILVIDMRGCHDNITS---DAINALS---TD--DNTHF-----DQIMLIHDFQDASVDAFIRI 66 (296)
Q Consensus 1 ~~~~m-i~F~Kmhg~GNDFiiiD~~~~~~~~~~---~~i~~~~---~~--~giG~-----Dgli~i~~~~~~~~d~~m~~ 66 (296)
|+.-| |+.+-|-|-=--=+++...+.+.+... ...+.+. .| .|+|. --+-+|.++..+.+|..+.|
T Consensus 1 m~~q~~iP~~~mRGGTSKG~~f~~~dLP~d~~~~d~~ll~~mGSpD~rQiDGlGGg~s~tSKvaIV~~S~~~~~DVDY~F 80 (391)
T 3g7k_A 1 MSDQMRIPCVIMRAGTSKGIFLKGNDLPADQELRDKVILRIFGSPDVRQIDGLAGADPLTSKLAIIGPSTHPDADVDYTF 80 (391)
T ss_dssp -CCEEEEEEEEEEETTEEEEEEEGGGSCSSHHHHHHHHHHHHTCSCTTCTTSSSCSSGGGSEEEEEEECCSTTCSEEEEE
T ss_pred CCCCCCCCEEEEECCCCCEEEECHHHCCCCHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCEEEEEECCCCCCCCEEEEE
T ss_conf 99774155899814565064671776998878999999997189980211677677666635999915877885047888
Q ss_pred EECCC-----CCCCCCCCHHHHHHHHHHCCC------CCCEEEE-EECCCC-EEEE-ECCCCEEEEC----C-CCCCCC-
Q ss_conf 71787-----621233203322311100135------7640379-835883-7999-8577427740----3-687777-
Q gi|254780710|r 67 INCDG-----SEVQSCGNGMRCVVRFLTSRM------KRKSFTF-ETIRGI-LVAK-ENRDGSISVD----M-GEPILD- 126 (296)
Q Consensus 67 fN~DG-----S~A~mCGNG~Rc~a~yl~~~~------~~~~~~i-~T~~g~-~~~~-~~~~~~v~V~----m-G~p~~~- 126 (296)
---.= +-+.+|||=+-.++-|+.++- .....+| .|..+. +.+. ...++.+..+ + |.|-..
T Consensus 81 ~QV~v~~~~VD~~~NCGN~~saVgpfAie~GLV~~~~~~t~VRI~n~NT~k~i~~~v~~~~G~~~~~Gd~~IdGVpGt~a 160 (391)
T 3g7k_A 81 AQVSITDAVVDYNGNCGNISAGVGPFAIDESFVKAVEPMTRVCIHNTNTGKLLYAEVEVEDGKAKVSGDCKIDGVPGTNA 160 (391)
T ss_dssp EEECSSSSCEECSSCCHHHHHHHHHHHHHTTSSCCCSSEEEEEEEETTTCCEEEEEEEEETTEECCCCSBCCTTSSSCBC
T ss_pred EEEECCCCEEECCCCCCCHHHHCCHHHHHCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCCCCCCCEECCCCCCCCC
T ss_conf 87523664441344544245403056886787236899458999971789879999975798202106623257788888
Q ss_pred --------------HHHCCCCCCCCCCCCCEEECCCCCCCEECCEEEEECCCCEEEEECCCCCC--H----HHH------
Q ss_conf --------------77685656565434430110577774021309995587427974255768--6----888------
Q gi|254780710|r 127 --------------WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY--H----YDL------ 180 (296)
Q Consensus 127 --------------~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iGNPH~Vi~v~d~i~--~----~~l------ 180 (296)
-+..|--...+. +.+. . .....++|+.|||-.++-.+ |+- . .+|
T Consensus 161 ~I~l~F~d~aGs~TG~LlPTGn~~D~-----i~~~---g-~~i~vS~ID~g~P~Vfv~A~-dlG~~G~E~p~~l~a~~~l 230 (391)
T 3g7k_A 161 PELMDFSDTAGAATGKVLPTGNVVDV-----LSTS---K-GDIDVSIVDVANPCIFVHAK-DVNMTGTETPDVINGNADL 230 (391)
T ss_dssp CEEEECGGGBTTTTSSSSTTSCSCEE-----ECCT---T-CCEEEEEEEBSSEEEEEESG-GGTCCSCCCHHHHHTCHHH
T ss_pred CEECCCCCCCCCCCCCCCCCCCCCEE-----EECC---C-CEEEEEEEECCCCEEEEEHH-HCCCCCCCCHHHHHCCHHH
T ss_conf 23624668677778876789997607-----9548---9-82899999678848999877-8587775369878468999
Q ss_pred HHHHHCCC------------------CCCCCCCCCCEEEEEE--------------CCCCEEEEEECCCCC-CCCCCCHH
Q ss_conf 76310002------------------3323755551467997--------------288728999804678-76656323
Q gi|254780710|r 181 ASFGNLLA------------------KHPMFSEGVNLSIARV--------------TSLESLDLRTWERGV-GLTAACGS 227 (296)
Q Consensus 181 ~~~g~~i~------------------~~~~Fp~gvNV~fv~v--------------~~~~~I~iRt~ERGv-GeTlACGT 227 (296)
...=..|| +.+.+|. +.++.- .++-.|..|.|=-|. -.+++ .|
T Consensus 231 l~rlE~IR~~aa~~MGL~~~~~~a~~~~~~~PK---i~lVs~P~~~~~~s~g~~i~~~~~di~~R~~s~~~~H~a~~-vT 306 (391)
T 3g7k_A 231 LAYLEEIRAKCCVKIGMAATEKEASEKSPAFPM---IAFVTKPEDYVDFSTGNTISGDDVDLVSRLMFMQVLHKTYA-GT 306 (391)
T ss_dssp HHHHHHHHHHHHHHTTSCSSHHHHHHHCSSSSE---EEEEESCCCEECTTTCCEECTTSCSEEEEEECSSSBCSSCC-HH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCE---EEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHH-HH
T ss_conf 999999999999864887784563213688887---99955875566655675123666458999804898623331-46
Q ss_pred HHHHHHHHHHHHC--------C--CCCCEEEECCCCEEEEEE-ECCCEEE---EEECEEEEEEEEEEECCCCCC
Q ss_conf 5899999999817--------8--898079990795799999-5898199---994628999889984132000
Q gi|254780710|r 228 AACASVVASGCLH--------K--TNRAVSVKMLGGGLLIEW-HDNNHVF---MTGEAKKEWEGKLDIKTGKWI 287 (296)
Q Consensus 228 GA~Asa~~~~~~~--------~--~~~~v~V~~pGG~L~v~~-~~~~~i~---l~Gpa~~vf~G~~~i~~~~~~ 287 (296)
||+|.|.++..-| . ....++|..|.|.+.|.. .+++.+. +.-.|..+|+|++.+....|.
T Consensus 307 gavclAaAa~ipGTV~~~l~~~~~~~~~v~I~HPsG~i~V~~~~~~~~v~~a~v~RTAR~Lm~G~Vyvp~~~~~ 380 (391)
T 3g7k_A 307 ATACTGSAARIPGTIVNQVLRDTGDEDTVRIGHPAGVIPVVSIVKDGKVEKAALIRTARRIMEGYVYVEKAKLV 380 (391)
T ss_dssp HHHHHHHHHHSTTSHHHHHCCCCTTCCEEEEEETTEEEEEEEEEETTEEEEEEEEECEEEEEEEEEEEEGGGCC
T ss_pred HHHHHHHHHHCCCCCHHHHHCCCCCCCEEEEECCCCEEEEEEECCCCCEEEEEEEEECHHHEEEEEECCHHHCC
T ss_conf 78888888707984066651367887659997899379999985899589999997401020378976566626
No 16
>1qya_A ORFB, hypothetical protein YDDE; putative phenazine biosynthesis protein, epimerase, antibiotic biosynthesis protein, structural genomics; 2.00A {Escherichia coli} SCOP: d.21.1.2 d.21.1.2 PDB: 1sdj_A 1qy9_A
Probab=96.53 E-value=0.031 Score=33.23 Aligned_cols=91 Identities=14% Similarity=0.167 Sum_probs=69.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 58742797425576868887631000233237555514679972887289998046787665632358999999998178
Q gi|254780710|r 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 (296)
Q Consensus 162 iGNPH~Vi~v~d~i~~~~l~~~g~~i~~~~~Fp~gvNV~fv~v~~~~~I~iRt~ERGvGeTlACGTGA~Asa~~~~~~~~ 241 (296)
.|||=+|++..+.+....+..+++.+...+ .-|+.-.+....++|.|=-+ +|-.=||-++.|++.+....+.
T Consensus 27 ~GNpaaVv~~~~~l~~~~mq~IA~e~n~sE-------TaFv~~~~~a~~~lR~FtP~-~Ev~~CGHatlaaa~~l~~~~~ 98 (307)
T 1qya_A 27 RGNSAGVVFPADNLSEAQMQLIARELGHSE-------TAFLLHSDDSDVRIRYFTPT-VEVPICGHATVAAHYVRAKVLG 98 (307)
T ss_dssp CSEEEEEEECCTTCCHHHHHHHHHHHCCSC-------EEEEECCSSSSEEEEEECSS-SEECC--CHHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCE-------EEEEECCCCCCEEEEEECCC-CHHHCCCCHHHHHHHHHHHHCC
T ss_conf 876459998898999999999999869977-------99997788885799996698-6021267608889998766236
Q ss_pred CC-CCEEEECCCCEEEEEEE
Q ss_conf 89-80799907957999995
Q gi|254780710|r 242 TN-RAVSVKMLGGGLLIEWH 260 (296)
Q Consensus 242 ~~-~~v~V~~pGG~L~v~~~ 260 (296)
.. ..+.+....|.+.+...
T Consensus 99 ~~~~~~~~~t~~g~~~~~~~ 118 (307)
T 1qya_A 99 LGNCTIWQTSLAGKHRVTIE 118 (307)
T ss_dssp CCSEEEEEECC--CEEEEEE
T ss_pred CCCCCEEEEECCCCEEEEEE
T ss_conf 67650444203662267886
No 17
>1xub_A Phenazine biosynthesis protein PHZF; biosynthetic protein; 1.30A {Pseudomonas fluorescens} SCOP: d.21.1.2 d.21.1.2 PDB: 1u1w_A* 1u1v_A* 1u1x_A* 1xua_A* 1t6k_A
Probab=96.48 E-value=0.026 Score=33.73 Aligned_cols=95 Identities=19% Similarity=0.227 Sum_probs=69.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEE-ECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 587427974255768688876310002332375555146799-7288728999804678766563235899999999817
Q gi|254780710|r 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIAR-VTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 (296)
Q Consensus 162 iGNPH~Vi~v~d~i~~~~l~~~g~~i~~~~~Fp~gvNV~fv~-v~~~~~I~iRt~ERGvGeTlACGTGA~Asa~~~~~~~ 240 (296)
-|||=+|++..+.+.......+++.+...+ .-|+. -.+....++|.|=-+ +|-.-||-+++|++.+.....
T Consensus 36 ~GNpaaVv~~~~~l~~~~mq~IA~e~n~sE-------T~Fv~~~~~~~~~~lR~FTP~-~Ev~~CGHatlaaa~~l~~~~ 107 (298)
T 1xub_A 36 EGNPVAVFFDADDLPPAQMQRIAREMNLSE-------STFVLKPRNGGDALIRIFTPV-NELPFAGAPLLGTAIALGAHT 107 (298)
T ss_dssp SSEEEEEECSGGGSCHHHHHHHHHHHCSSC-------EEEEECCSSSSSEEEEEECSS-CEESCCHHHHHHHHHHHHTTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCE-------EEEEECCCCCCEEEEEEECCC-CCCCCCCCHHHHHHHHHHHCC
T ss_conf 986159996898999999999999869966-------999855888780799996798-603457843788887775115
Q ss_pred CCCCCEEEECCCCEEEEEEE-CCCEE
Q ss_conf 88980799907957999995-89819
Q gi|254780710|r 241 KTNRAVSVKMLGGGLLIEWH-DNNHV 265 (296)
Q Consensus 241 ~~~~~v~V~~pGG~L~v~~~-~~~~i 265 (296)
....+++.+..|.+.++.. +++.+
T Consensus 108 -~~~~~~~et~~g~~~v~~~~~~~~~ 132 (298)
T 1xub_A 108 -DNHRLYLETQMGTIAFELERQNGSV 132 (298)
T ss_dssp -CCSEEEEEETTEEEEEEEEEETTEE
T ss_pred -CCCCEEEEEEEEEEEEEEEEECCCE
T ss_conf -6541399997425899998005606
No 18
>1s7j_A Phenazine biosynthesis protein PHZF family; bacteria, structural genomics, PSI, protein structure initiative; 2.30A {Enterococcus faecalis V583} SCOP: d.21.1.2
Probab=94.75 E-value=0.22 Score=27.57 Aligned_cols=93 Identities=16% Similarity=0.124 Sum_probs=66.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 58742797425576868887631000233237555514679972887289998046787665632358999999998178
Q gi|254780710|r 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 (296)
Q Consensus 162 iGNPH~Vi~v~d~i~~~~l~~~g~~i~~~~~Fp~gvNV~fv~v~~~~~I~iRt~ERGvGeTlACGTGA~Asa~~~~~~~~ 241 (296)
.|||-+|++..+++.......+++.+...+ .-|+.- +.+..++|.|=-.. |=-=||-+..|++.+....+.
T Consensus 17 ~GNpaaVv~~~~~ls~~~MQ~IA~e~n~sE-------T~Fv~~-~~~~~~vR~FTP~~-Ev~fcGH~Tlgaa~~L~~~~~ 87 (262)
T 1s7j_A 17 KGNPAAVYVLEKWLPEAVMQNIAIENNLSE-------TAFTVK-EGQSYALRWFTPER-EIDLCGHATLATAFVLFNYYS 87 (262)
T ss_dssp SSEEEEEEECSSCCCHHHHHHHHHHHCCSC-------EEEEEE-ETTEEEEEEECSSS-EESCCHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCC-------EEEECC-CCCCEEEEEECCCC-CCCCCCCCHHHHHHHHHHHCC
T ss_conf 973479998898989999999999879994-------599844-67731689972665-302356705778999997379
Q ss_pred CCCCE-EEECCCCEEEEEEECCC
Q ss_conf 89807-99907957999995898
Q gi|254780710|r 242 TNRAV-SVKMLGGGLLIEWHDNN 263 (296)
Q Consensus 242 ~~~~v-~V~~pGG~L~v~~~~~~ 263 (296)
..... .....++.+.+....+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~ 110 (262)
T 1s7j_A 88 VAEETLHFTSQSGPLAVTKKEEY 110 (262)
T ss_dssp CCSSEEEEEETTEEEEEEEETTE
T ss_pred CCCEEEEEEEECCCEEEEEECCC
T ss_conf 87506999850341222430353
No 19
>2azp_A Hypothetical protein PA1268; PA1268,APC5861,sulfur SAD, structural genomics, PSI, protein structure initiative; 2.13A {Pseudomonas aeruginosa}
Probab=94.25 E-value=0.29 Score=26.83 Aligned_cols=113 Identities=12% Similarity=0.162 Sum_probs=72.1
Q ss_pred CCCCEEEEECC-CCCC----HHHHHHHHH---CCCCCCCC-CCC---CCEEEEEEC--CCCEEEEEECCCCCCCCCCCHH
Q ss_conf 58742797425-5768----688876310---00233237-555---514679972--8872899980467876656323
Q gi|254780710|r 162 MGNPHAIFFVE-DDLY----HYDLASFGN---LLAKHPMF-SEG---VNLSIARVT--SLESLDLRTWERGVGLTAACGS 227 (296)
Q Consensus 162 iGNPH~Vi~v~-d~i~----~~~l~~~g~---~i~~~~~F-p~g---vNV~fv~v~--~~~~I~iRt~ERGvGeTlACGT 227 (296)
-|||-.|++-- .++. ......+.. ..|..-++ |-| -+..|+... .....++|.|.= .+|.--||-
T Consensus 14 ~GnP~~VV~~g~p~~~g~~~~e~mq~ia~e~~~set~fl~ePrG~~~~~~~~~~~p~~~~ad~~vR~FTP-~~EvpfcGH 92 (318)
T 2azp_A 14 GGEPTRLVIGGFPDLGQGDMAERRRLLGERHDAWRAACILEPRGSDVLVGALLCAPVDPEACAGVIFFNN-SGYLGMCGH 92 (318)
T ss_dssp TTEEEEEEEECSCCCCSSCHHHHHHHHHHHCHHHHHHHHSTTTSCTTCEEEEEECCSSTTSSEEEEEECS-SSBCSCCHH
T ss_pred CCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCHHHHHHCCCCCCCCCCEEEEECCCCCCCCCEEEEEECC-CCCCCCCCC
T ss_conf 9863479972887899999999999999761747585500777777532004549999677558999636-864565577
Q ss_pred HHHHHHHHHHHHCCCCC-CEEEECCCCEEEEEEECCCEEEEEECEEEEE
Q ss_conf 58999999998178898-0799907957999995898199994628999
Q gi|254780710|r 228 AACASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEW 275 (296)
Q Consensus 228 GA~Asa~~~~~~~~~~~-~v~V~~pGG~L~v~~~~~~~i~l~Gpa~~vf 275 (296)
.+.|++.+....|.... .+.++++.|.+.++...++.+.......+..
T Consensus 93 aTigta~~L~e~G~~~~~~~~~et~~G~v~v~~~~~~~~~~~~~p~~~~ 141 (318)
T 2azp_A 93 GTIGLVASLAHLGRIGPGVHRIETPVGEVEATLHEDGSVSVRNVPAYRY 141 (318)
T ss_dssp HHHHHHHHHHHTTSCCSEEEEEECTTCCEEEEECTTSCEEEECSCBEEE
T ss_pred CCEEEEEEHHHCCCCCCCCEEEEECCCEEEEEEEEEEEEEEECCCCCCC
T ss_conf 5101254031448844530578843521457766325788511676433
No 20
>1u0k_A Gene product PA4716; sctructural genomics, MCSG, protein structure initiative, structural genomics, PSI; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: d.21.1.2 d.21.1.2
Probab=92.77 E-value=0.5 Score=25.24 Aligned_cols=92 Identities=10% Similarity=0.056 Sum_probs=64.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEE-CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 5874279742557686888763100023323755551467997-288728999804678766563235899999999817
Q gi|254780710|r 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARV-TSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 (296)
Q Consensus 162 iGNPH~Vi~v~d~i~~~~l~~~g~~i~~~~~Fp~gvNV~fv~v-~~~~~I~iRt~ERGvGeTlACGTGA~Asa~~~~~~~ 240 (296)
.|||=+|++..+.+....+..+++.+.... .-|+.- .+....++|.|=-+ +|-.-||-+..|++.+....+
T Consensus 19 ~GNpaaVv~~~~~l~~~~~q~iA~e~~~se-------T~Fv~~~~~~~~~~lr~Ftp~-~E~~~cGHatlaaa~~l~~~~ 90 (288)
T 1u0k_A 19 TGNGLAVFDDASALDDAAMQAWTRELRQFE-------SIFLLPGDDPRAFRARIFTLE-EELPFAGHPLLGAAALLHHLR 90 (288)
T ss_dssp CSEEEEEESCCTTCCHHHHHHHHHHHCCSE-------EEEEEECSCTTEEEEEEEESS-CBCCSCCTHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCE-------EEEEECCCCCCEEEEEEECCC-CCHHHCCCCHHHHHHHHHHHC
T ss_conf 886569998899989999999999869987-------999966888771899997799-734206852888999886530
Q ss_pred CCC--CCEEEECCCCEEEEEEEC
Q ss_conf 889--807999079579999958
Q gi|254780710|r 241 KTN--RAVSVKMLGGGLLIEWHD 261 (296)
Q Consensus 241 ~~~--~~v~V~~pGG~L~v~~~~ 261 (296)
... ....+...+|.+.+.+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~ 113 (288)
T 1u0k_A 91 GGDNEQHWTLHLASKSVALRSVR 113 (288)
T ss_dssp CCSSCEEEEEECSSCEEEEEEEE
T ss_pred CCCCCCEEEEEECCCCEEEEEEE
T ss_conf 25787158999604540577761
No 21
>2pw0_A PRPF methylaconitate isomerase; propionate catabolism, diaminopimelate epimerase like, aconitate binding, unknown function; HET: TRC; 1.57A {Shewanella oneidensis} PDB: 2pvz_A 2h9f_A
Probab=91.02 E-value=0.78 Score=23.96 Aligned_cols=265 Identities=17% Similarity=0.156 Sum_probs=132.5
Q ss_pred CEEEEECCCCCCEEEEECCCCCCCCC-------HHHHHHHCC-----C--CCCCC-----CEEEEEECCCCCCCCEEEEE
Q ss_conf 11378517677389994778887888-------889987203-----5--67143-----55899825888886689999
Q gi|254780710|r 6 VDFAKMEGIGNKILVIDMRGCHDNIT-------SDAINALST-----D--DNTHF-----DQIMLIHDFQDASVDAFIRI 66 (296)
Q Consensus 6 i~F~Kmhg~GNDFiiiD~~~~~~~~~-------~~~i~~~~~-----~--~giG~-----Dgli~i~~~~~~~~d~~m~~ 66 (296)
|+.+-|-|-=--=+++...+.+.+.+ +.+.+.... | .|+|. --+-+|.++..+.+|..+.|
T Consensus 12 ip~~~mRGGTSkG~~f~~~dLP~d~~~~~~~~d~ill~~mGSpDp~~RQiDGlGGg~s~tSKvaIV~~s~~~~~DVDY~F 91 (397)
T 2pw0_A 12 VAATYMRGGTSKGVFFRLQDLPEAAQVPGPARDALLLRVIGSPDPYAKQIDGMGGATSSTSKTVILSHSSKANHDVDYLF 91 (397)
T ss_dssp EEEEEEEETTEEEEEEEGGGSCGGGSSSSHHHHHHHHHHHTCSCTTSSCTTSSCCSSTTTSEEEEEEECCSTTCSEEEEE
T ss_pred EEEEEEECCCCCEEEECHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEE
T ss_conf 54899814565053761766992511241468899999718998554434556677656535999947987897614688
Q ss_pred EEC-----CCCCCCCCCCHHHHHHHHHHCC-C-CC------C--EEEE-EECCCC-EEEEE-CCCCEEEEC----C-CCC
Q ss_conf 717-----8762123320332231110013-5-76------4--0379-835883-79998-577427740----3-687
Q gi|254780710|r 67 INC-----DGSEVQSCGNGMRCVVRFLTSR-M-KR------K--SFTF-ETIRGI-LVAKE-NRDGSISVD----M-GEP 123 (296)
Q Consensus 67 fN~-----DGS~A~mCGNG~Rc~a~yl~~~-~-~~------~--~~~i-~T~~g~-~~~~~-~~~~~v~V~----m-G~p 123 (296)
--- -=+-+.+|||=+-.++-|+.++ . .. . ..+| .|..+. +.+.+ ..++.+..+ + |.|
T Consensus 92 ~QV~v~~~~VD~~~NCGNm~saVgpfAie~GLV~a~~~~~~~~t~VrI~ntNT~k~i~~~v~~~~G~~~~~Gd~~IdGVp 171 (397)
T 2pw0_A 92 GQVSIDKPFVDWSGNCGNLTAAVGAFAISNGLIDAARIPRNGVCTVRIWQANIGKTIIAHVPITDGAVQETGDFELDGVT 171 (397)
T ss_dssp EEECSSSSCEECSSCCTTTHHHHHHHHHHTTCSCGGGCCSSEEEEEEEEETTTTEEEEEEEEEETTEECCCCSBCCTTCS
T ss_pred EEEECCCCEEECCCCCCCHHHCCCHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCCCCCCCCEECCCCC
T ss_conf 88731674442355655233214245876688454325889869999997389866899962489741567985416878
Q ss_pred CCC------------------HHHCCCCCCCCCCCCCEEECCCCCCCEECCEEEEECCCCEEEEECCCCCC------HHH
Q ss_conf 777------------------77685656565434430110577774021309995587427974255768------688
Q gi|254780710|r 124 ILD------------------WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY------HYD 179 (296)
Q Consensus 124 ~~~------------------~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iGNPH~Vi~v~d~i~------~~~ 179 (296)
-.. -+..|--...+. +.+ ........++|+.|||-+.+-.+ |+- ..+
T Consensus 172 Gt~a~I~l~F~d~aGs~~~~tG~LlPTGn~~D~-----i~~---~g~~~i~vT~VD~g~P~Vfv~A~-dlGl~G~E~p~e 242 (397)
T 2pw0_A 172 FPAAEVQIEFMNPAADDDGEGGCMFPTGNLVDV-----LEV---PGIGRFNATMINAGIPTIFINAE-DLGYTGTELQDD 242 (397)
T ss_dssp SCBCCEEEEEESCBC--------CCTTSCSSEE-----EEE---TTTEEEEEEEEEBSSEEEEEEGG-GGTCCSCCCHHH
T ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEE-----EEC---CCCCCEEEEEEECCCCEEEEEHH-HCCCCCCCCHHH
T ss_conf 888860477006235788877773799997304-----863---79884789999568968999888-868776569888
Q ss_pred H------HHHHHCCCC-----------------CCCCCCCCCEEEEEE-------------CCCCEEEEEECCCCCCCCC
Q ss_conf 8------763100023-----------------323755551467997-------------2887289998046787665
Q gi|254780710|r 180 L------ASFGNLLAK-----------------HPMFSEGVNLSIARV-------------TSLESLDLRTWERGVGLTA 223 (296)
Q Consensus 180 l------~~~g~~i~~-----------------~~~Fp~gvNV~fv~v-------------~~~~~I~iRt~ERGvGeTl 223 (296)
| ...=..||. .+..|. +.++.- .+.-.|.+|.|=-|.=..-
T Consensus 243 L~a~~~ll~rlE~IR~~Aa~~MGL~~~~~~~~~~~~vPK---i~lVspP~~~~~~~g~~~~~~~~dI~~R~~s~~~~H~a 319 (397)
T 2pw0_A 243 INSDNAALAKFETIRAHGALRMGLIKHIDEAASRQHTPK---IAFVAPPKSYASSSGKTVAAEDVDLLVRALSMGKLHHA 319 (397)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTSCSSGGGGGGCCSSSE---EEEEESCCCEECTTSCEECGGGCSEEEEEEETTEECSS
T ss_pred HHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCC---EEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHH
T ss_conf 741899999999999999986589777235522378880---79984787654568842026777558998228752144
Q ss_pred CCHHHHHHHHHHHHHHC---------CCCCCEEEECCCCEEEEEEE---CCCE-----EEEEECEEEEEEEEEEEC
Q ss_conf 63235899999999817---------88980799907957999995---8981-----999946289998899841
Q gi|254780710|r 224 ACGSAACASVVASGCLH---------KTNRAVSVKMLGGGLLIEWH---DNNH-----VFMTGEAKKEWEGKLDIK 282 (296)
Q Consensus 224 ACGTGA~Asa~~~~~~~---------~~~~~v~V~~pGG~L~v~~~---~~~~-----i~l~Gpa~~vf~G~~~i~ 282 (296)
-=.|||+|.+.++..-| .....++|..|.|.+.|... +++. ..+.-.|..+|+|++.+-
T Consensus 320 ~~vTgavcla~Aa~ipGTv~~~~~~~~~~~~v~I~HPsG~~~V~~~~~~~~~~~~v~~a~v~RTAR~Lm~G~V~VP 395 (397)
T 2pw0_A 320 MMGTAAVAIGTAAAIPGTLVNLAAGGGEKEAVRFGHPSGTLRVGAQAVQENGEWTVIKAIMSRSARVLMEGFVRVP 395 (397)
T ss_dssp CCHHHHHHHHHHHTSTTSHHHHHTTSSCCSEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEECEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHCCCCCCEEEEECCCCEEEEEEEEECCCCCCEEEEEEEEEECHHHCEEEEECC
T ss_conf 4167899999988169837888505788875999689937999999863699824899999973231230679668
No 22
>1sr8_A Cobalamin biosynthesis protein (CBID); structural genomics, PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus dsm 4304} SCOP: e.54.1.1
Probab=79.32 E-value=1.5 Score=22.14 Aligned_cols=10 Identities=20% Similarity=0.258 Sum_probs=4.5
Q ss_pred CEEEEEECCC
Q ss_conf 4037983588
Q gi|254780710|r 95 KSFTFETIRG 104 (296)
Q Consensus 95 ~~~~i~T~~g 104 (296)
++..|.|..|
T Consensus 64 ~~V~I~lP~G 73 (298)
T 1sr8_A 64 EKVKVSTPAG 73 (298)
T ss_dssp EEEEECCTTS
T ss_pred CEEEEECCCC
T ss_conf 7899988799
No 23
>3fov_A UPF0102 protein RPA0323; structural genomics, APC7380, PSI-2, protein structure initiative; 1.88A {Rhodopseudomonas palustris CGA009}
Probab=27.36 E-value=26 Score=13.95 Aligned_cols=29 Identities=14% Similarity=0.147 Sum_probs=12.9
Q ss_pred HHHHHHHHHHCC-CCCCEEEEEECCCCEEE
Q ss_conf 332231110013-57640379835883799
Q gi|254780710|r 80 GMRCVVRFLTSR-MKRKSFTFETIRGILVA 108 (296)
Q Consensus 80 G~Rc~a~yl~~~-~~~~~~~i~T~~g~~~~ 108 (296)
|=+.+++||..+ +..-.-...+..|.+..
T Consensus 26 gE~~A~~~L~~~Gy~Il~rN~r~~~GEIDL 55 (134)
T 3fov_A 26 AEASAADYLERQGYRILARRFKTRCGEIDL 55 (134)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCCCCE
T ss_conf 999999999987999901013579996088
No 24
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
Probab=22.49 E-value=26 Score=13.95 Aligned_cols=14 Identities=36% Similarity=0.755 Sum_probs=7.4
Q ss_pred CCCCHHHHHHHHHHCC
Q ss_conf 3320332231110013
Q gi|254780710|r 76 SCGNGMRCVVRFLTSR 91 (296)
Q Consensus 76 mCGNG~Rc~a~yl~~~ 91 (296)
=||+|.= +.+|.++
T Consensus 54 GCG~G~~--~~~La~~ 67 (257)
T 3f4k_A 54 GCGTGGQ--TLFLADY 67 (257)
T ss_dssp TCTTSHH--HHHHHHH
T ss_pred CCCCCHH--HHHHHHH
T ss_conf 1779799--9999986
No 25
>1xvs_A Protein APAG; MCSG APC26324, midwest center for structural genomics, protein structure initiative, PSI, structural genomics, unknown function; 2.01A {Vibrio cholerae} SCOP: b.1.23.1
Probab=21.95 E-value=32 Score=13.33 Aligned_cols=19 Identities=26% Similarity=0.414 Sum_probs=16.9
Q ss_pred EEEEEECCCCCCCCCCCHH
Q ss_conf 9999717876212332033
Q gi|254780710|r 63 FIRIINCDGSEVQSCGNGM 81 (296)
Q Consensus 63 ~m~~fN~DGS~A~mCGNG~ 81 (296)
+|.|.++||..-+..|+|+
T Consensus 50 ~W~I~d~~g~~~~V~G~GV 68 (126)
T 1xvs_A 50 RWLITDADGKQTVVEGDGV 68 (126)
T ss_dssp EEEEEETTCCEEEEEEESB
T ss_pred EEEEEECCCCEEECCCCCE
T ss_conf 7899949997797548850
Done!