HHSEARCH alignment of GI: 254780710 and SCOP domain: d1u0ka1

Alignment
>d1u0ka1 d.21.1.2 (A:2-130) Hypothetical protein PA4716 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=97.18  E-value=0.0029  Score=38.42  Aligned_cols=110  Identities=16%  Similarity=0.211  Sum_probs=77.8

Q ss_pred             EEEECCCCCCEEEE-ECCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf             37851767738999-47788878888899872035671435589982588888668999971787621233203322311
Q gi|254780710|r    8 FAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVR   86 (296)
Q Consensus         8 F~Kmhg~GNDFiii-D~~~~~~~~~~~~i~~~~~~~giG~Dgli~i~~~~~~~~d~~m~~fN~DGS~A~mCGNG~Rc~a~   86 (296)
                      |+.=.-.||-=-|+ |    ...++.++.+.+++..+.  ---.|+.++.+ ..++++++|.+.+ |-.+||-++-..++
T Consensus        10 Ft~~~~~GNpaaVv~~----~~~l~~~~mq~IA~e~n~--sET~Fv~~~~~-~~~~~vR~FTP~~-Ev~~cGH~Tlaaa~   81 (129)
T d1u0ka1          10 FAERPLTGNGLAVFDD----ASALDDAAMQAWTRELRQ--FESIFLLPGDD-PRAFRARIFTLEE-ELPFAGHPLLGAAA   81 (129)
T ss_dssp             SCSSTTCSEEEEEESC----CTTCCHHHHHHHHHHHCC--SEEEEEEECSC-TTEEEEEEEESSC-BCCSCCTHHHHHHH
T ss_pred             CCCCCCCCCEEEEEEC----CCCCCHHHHHHHHHHHCC--CEEEEEECCCC-CCCEEEEEEECCC-CCCCCCCHHHHHHH
T ss_conf             4499998545899988----867999999999998399--62699835899-8725899983565-55445647899999


Q ss_pred             HHHCC---CCCCEEEEEECCCCEEEEECCC-CEEEECC--CCCCC
Q ss_conf             10013---5764037983588379998577-4277403--68777
Q gi|254780710|r   87 FLTSR---MKRKSFTFETIRGILVAKENRD-GSISVDM--GEPIL  125 (296)
Q Consensus        87 yl~~~---~~~~~~~i~T~~g~~~~~~~~~-~~v~V~m--G~p~~  125 (296)
                      .|.+.   .....+.++|.+|.+.+....+ ..+++.|  +.|.|
T Consensus        82 ~L~~~~~~~~~~~~~~~t~~g~~~v~~~~~~~~~~i~m~q~~p~f  126 (129)
T d1u0ka1          82 LLHHLRGGDNEQHWTLHLASKSVALRSVRAGSGFYAEMDQGRAEF  126 (129)
T ss_dssp             HHHHHHCCSSCEEEEEECSSCEEEEEEEEETTEEEEEEEEEECEE
T ss_pred             HHHHHCCCCCCCEEEEEECCCEEEEEEEECCCEEEEEEECCCCCC
T ss_conf             999854778997199997751799999975998999962999867


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Diaminopimelate epimerase-like
superfamily: Diaminopimelate epimerase-like
family: PhzC/PhzF-like
domain: Hypothetical protein PA4716
species: Pseudomonas aeruginosa [TaxId: 287]