HHSEARCH alignment of GI: 254780710 and SCOP domain: d1u0ka2

Alignment
>d1u0ka2 d.21.1.2 (A:131-283) Hypothetical protein PA4716 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=99.42  E-value=2.7e-13  Score=104.53  Aligned_cols=118  Identities=18%  Similarity=0.133  Sum_probs=90.2

Q ss_pred             EEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCEEEEEECCC-CCCCCCCCHHHHHHHHHH
Q ss_conf             0999558742797425576868887631000233237555514679972887289998046-787665632358999999
Q gi|254780710|r  157 PFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER-GVGLTAACGSAACASVVA  235 (296)
Q Consensus       157 ~~~v~iGNPH~Vi~v~d~i~~~~l~~~g~~i~~~~~Fp~gvNV~fv~v~~~~~I~iRt~ER-GvGeTlACGTGA~Asa~~  235 (296)
                      +..+++|+||+++.++ +....   .. +.+.........+|+.++.+.+++.+..|+|+| |+.|+.+|||++||.+.+
T Consensus        25 ~~~vs~G~~~l~v~v~-~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~fp~~Gi~EDpaTGSa~~ala~y   99 (153)
T d1u0ka2          25 PRVVSTGLPYLLLPVT-AEALG---RA-RQVNDLQEALDKLGAAFVYLLDVDGREGRTWDNLGLVEDVATGSAAGPVAAY   99 (153)
T ss_dssp             CEEEESSSCEEEEEBC-HHHHH---TC-CCCSCCHHHHHHHTCSEEEEEETTTTEEECBCTTSCSBCSCCHHHHHHHHHH
T ss_pred             CEEEECCCCEEEEEEC-CHHHH---CC-CCCHHHHHHHHHCCCEEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHH
T ss_conf             5899638998999965-66770---46-7837999877635933999981896344113566878875501879999999


Q ss_pred             HHHHCCCCC--CEEEEC-----CCCEEEEEEECCCEEEEEECEEEEEEEEE
Q ss_conf             998178898--079990-----79579999958981999946289998899
Q gi|254780710|r  236 SGCLHKTNR--AVSVKM-----LGGGLLIEWHDNNHVFMTGEAKKEWEGKL  279 (296)
Q Consensus       236 ~~~~~~~~~--~v~V~~-----pGG~L~v~~~~~~~i~l~Gpa~~vf~G~~  279 (296)
                      ..+.++...  .+.+++     ..|.|.+++..++.|++.|+|..|++|++
T Consensus       100 l~~~~~~~~~~~~~~~QG~~~grps~l~v~~~~~~~V~vgG~av~v~~G~l  150 (153)
T d1u0ka2         100 LVEYGLAARGEPFVLHQGRFLERPSRLDVQVATDGSVRVGGHVQLLARAEL  150 (153)
T ss_dssp             HHHTTSSCTTSCEEEEECGGGTCCEEEEEEECSSSEEEEEEEEEEEEEEEE
T ss_pred             HHHHHCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEEEEEEEEEEEEEE
T ss_conf             998515577837998376323787289999878994999978999999999


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Diaminopimelate epimerase-like
superfamily: Diaminopimelate epimerase-like
family: PhzC/PhzF-like
domain: Hypothetical protein PA4716
species: Pseudomonas aeruginosa [TaxId: 287]