RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780710|ref|YP_003065123.1| diaminopimelate epimerase
[Candidatus Liberibacter asiaticus str. psy62]
(296 letters)
>gnl|CDD|179032 PRK00450, dapF, diaminopimelate epimerase; Provisional.
Length = 274
Score = 294 bits (754), Expect = 2e-80
Identities = 109/283 (38%), Positives = 155/283 (54%), Gaps = 14/283 (4%)
Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNT--HFDQIMLIHDFQDASVDA 62
+ F KM G+GN +VID R +T + L D + D ++L+ D
Sbjct: 2 KMKFTKMHGLGNDFVVIDAR--TQELTPELARKLC-DRHFGIGADGLLLVEPPSSPGADF 58
Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
+RI N DGSE + CGNG RC RFL + + ET+ GI+ A+ DG ++VDM
Sbjct: 59 RMRIFNADGSEAEMCGNGARCFARFLYEKGLTNKTEIRVETLAGIIEAEVEDDGLVTVDM 118
Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
GEP + IPLA + + + +G VSMGNPHA+ FV DD+ D+
Sbjct: 119 GEPRFEPAEIPLA--EEDVIEKEYILGGQTVEVT----AVSMGNPHAVIFV-DDVDAADV 171
Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
G LL HP F EGVN++ +V + + LR +ERGVG T ACG+ ACA+ VA+ L
Sbjct: 172 EELGPLLENHPRFPEGVNVNFVQVVDRDHIRLRVYERGVGETLACGTGACAAAVAAIRLG 231
Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
+R V+V + GG L IEW + HV+MTG A ++G++D++T
Sbjct: 232 LLDRKVTVHLPGGDLTIEWKGDGHVYMTGPATLVFDGEIDLET 274
>gnl|CDD|129737 TIGR00652, DapF, diaminopimelate epimerase.
Length = 268
Score = 193 bits (493), Expect = 4e-50
Identities = 93/278 (33%), Positives = 143/278 (51%), Gaps = 20/278 (7%)
Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
F+KM G+GN +++D + + + + HF D ++ + + D
Sbjct: 3 FSKMHGLGNDFVLVDDFDAELVFEPEFVRQVC---DRHFGIGADGVLFVEPGSPEA-DYK 58
Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
+RI N DGSE + CGNG+RC +F+ + +K + ET+ G++V + + + VDMG
Sbjct: 59 MRIFNSDGSEAEMCGNGIRCFAKFVYEHGLVNKKDISVETLAGLIVLEVKSENKVKVDMG 118
Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
EP IPL + V GNPH + FV DD+ +L
Sbjct: 119 EPNFKPAEIPLTVWKFEEP---------EVGLFGEILAVDTGNPHLVVFV-DDVEGLNLL 168
Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
G LL H F EGVN++ +V + +++ LRT+ERG G T ACG+ ACAS A+ L
Sbjct: 169 ILGPLLEYHERFPEGVNVNFVQVKNDDTIKLRTYERGAGETLACGTGACASAAAALKLGG 228
Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
T + V+V + GG L IEW ++ HV+MTG A ++G+L
Sbjct: 229 TPKKVTVHLPGGELEIEWKEDGHVYMTGPAVLVFDGEL 266
>gnl|CDD|178151 PLN02536, PLN02536, diaminopimelate epimerase.
Length = 267
Score = 170 bits (432), Expect = 4e-43
Identities = 87/233 (37%), Positives = 119/233 (51%), Gaps = 23/233 (9%)
Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGSIS 117
D +RI N DGSE + CGNG+RC RF L + + S+ T G+++ + DG +
Sbjct: 42 DYTMRIFNSDGSEPEMCGNGIRCFARFIAELENLQGKNSYKIHTGAGLIIPEMQADGQVK 101
Query: 118 VDMGEPILDWKLIP--LARSFDK------MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
VDMGEPIL +P LA + D +D D G + VSMGNPH +
Sbjct: 102 VDMGEPILKGPEVPTKLAATKDGAVVQAELDVD----GKTWLVT-----CVSMGNPHCVT 152
Query: 170 FVEDDLY--HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
F E +L L G H MF N +V S L +R WERG G T ACG+
Sbjct: 153 FGEKELKVDDLPLEKIGPKFEHHEMFPARTNTEFVQVVSRSHLKMRVWERGAGATLACGT 212
Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
ACA VVA+ + +R +V + GG L IEW +NH++MTG A+ + G++
Sbjct: 213 GACALVVAAVLEGRADRNCTVDLPGGPLEIEWRESDNHIYMTGPAELVFYGEI 265
>gnl|CDD|184158 PRK13577, PRK13577, diaminopimelate epimerase; Provisional.
Length = 281
Score = 136 bits (344), Expect = 7e-33
Identities = 85/283 (30%), Positives = 135/283 (47%), Gaps = 18/283 (6%)
Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
+ F K +GN LVID R + ++DAI + + HF D I L D
Sbjct: 1 MKFYKYHALGNDYLVIDPRDAPFDPSADAIRRIC---HRHFGVGSDGI-LFGPLPSEGAD 56
Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK-ENRDGSISV 118
+RI N DGSE + GNG+R R+L + + + FT ET GI+ + + +I V
Sbjct: 57 FGLRIFNPDGSEAEKSGNGLRIFSRYLWDQGLVDDEPFTIETKGGIVECQVLDAGRTIQV 116
Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
+MG+ IP+A ++ ++ + + ++GNPH + +++
Sbjct: 117 EMGKVSFGSTDIPVAGEDREVLNEKLDVDGRRLTY----CAATIGNPHCVVLLDE--ISE 170
Query: 179 DLA-SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
+LA G L+ HP F N+ +V ++ + WERG G T A GS++CA+ +
Sbjct: 171 ELARELGPLIETHPRFPNRTNVQFLKVLDRNTIQIEIWERGAGYTLASGSSSCAAAAVAH 230
Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
L + +++V M GG + IE D+ HV MTG K EG L
Sbjct: 231 RLGLCDSSITVHMPGGQIDIEIKDDFHVSMTGPVTKVAEGSLS 273
>gnl|CDD|166363 PLN02722, PLN02722, indole-3-acetamide amidohydrolase.
Length = 422
Score = 27.9 bits (62), Expect = 3.4
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 129 LIPLARSFDKMD---RDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
+IP+A+SFD + RD + V H+ L+ P V+ P I ED
Sbjct: 161 VIPMAQSFDTVGWFARDPVILKRVGHVLLQQP-DVNPIKPSQIIIAED 207
>gnl|CDD|181565 PRK08850, PRK08850, 2-octaprenyl-6-methoxyphenol hydroxylase;
Validated.
Length = 405
Score = 27.4 bits (61), Expect = 4.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 190 HPMFSEGVNLSIARVTSLESLDLRTWERG 218
HP+ +GVNL + SL L W++G
Sbjct: 295 HPLAGQGVNLGLLDAASLAQEILALWQQG 323
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.322 0.137 0.420
Gapped
Lambda K H
0.267 0.0721 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,756,320
Number of extensions: 297196
Number of successful extensions: 460
Number of sequences better than 10.0: 1
Number of HSP's gapped: 444
Number of HSP's successfully gapped: 9
Length of query: 296
Length of database: 5,994,473
Length adjustment: 93
Effective length of query: 203
Effective length of database: 3,984,929
Effective search space: 808940587
Effective search space used: 808940587
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.7 bits)