RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780710|ref|YP_003065123.1| diaminopimelate epimerase [Candidatus Liberibacter asiaticus str. psy62] (296 letters) >gnl|CDD|179032 PRK00450, dapF, diaminopimelate epimerase; Provisional. Length = 274 Score = 294 bits (754), Expect = 2e-80 Identities = 109/283 (38%), Positives = 155/283 (54%), Gaps = 14/283 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNT--HFDQIMLIHDFQDASVDA 62 + F KM G+GN +VID R +T + L D + D ++L+ D Sbjct: 2 KMKFTKMHGLGNDFVVIDAR--TQELTPELARKLC-DRHFGIGADGLLLVEPPSSPGADF 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 +RI N DGSE + CGNG RC RFL + + ET+ GI+ A+ DG ++VDM Sbjct: 59 RMRIFNADGSEAEMCGNGARCFARFLYEKGLTNKTEIRVETLAGIIEAEVEDDGLVTVDM 118 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 GEP + IPLA + + + +G VSMGNPHA+ FV DD+ D+ Sbjct: 119 GEPRFEPAEIPLA--EEDVIEKEYILGGQTVEVT----AVSMGNPHAVIFV-DDVDAADV 171 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G LL HP F EGVN++ +V + + LR +ERGVG T ACG+ ACA+ VA+ L Sbjct: 172 EELGPLLENHPRFPEGVNVNFVQVVDRDHIRLRVYERGVGETLACGTGACAAAVAAIRLG 231 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 +R V+V + GG L IEW + HV+MTG A ++G++D++T Sbjct: 232 LLDRKVTVHLPGGDLTIEWKGDGHVYMTGPATLVFDGEIDLET 274 >gnl|CDD|129737 TIGR00652, DapF, diaminopimelate epimerase. Length = 268 Score = 193 bits (493), Expect = 4e-50 Identities = 93/278 (33%), Positives = 143/278 (51%), Gaps = 20/278 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F+KM G+GN +++D + + + + HF D ++ + + D Sbjct: 3 FSKMHGLGNDFVLVDDFDAELVFEPEFVRQVC---DRHFGIGADGVLFVEPGSPEA-DYK 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 +RI N DGSE + CGNG+RC +F+ + +K + ET+ G++V + + + VDMG Sbjct: 59 MRIFNSDGSEAEMCGNGIRCFAKFVYEHGLVNKKDISVETLAGLIVLEVKSENKVKVDMG 118 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP IPL + V GNPH + FV DD+ +L Sbjct: 119 EPNFKPAEIPLTVWKFEEP---------EVGLFGEILAVDTGNPHLVVFV-DDVEGLNLL 168 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL H F EGVN++ +V + +++ LRT+ERG G T ACG+ ACAS A+ L Sbjct: 169 ILGPLLEYHERFPEGVNVNFVQVKNDDTIKLRTYERGAGETLACGTGACASAAAALKLGG 228 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T + V+V + GG L IEW ++ HV+MTG A ++G+L Sbjct: 229 TPKKVTVHLPGGELEIEWKEDGHVYMTGPAVLVFDGEL 266 >gnl|CDD|178151 PLN02536, PLN02536, diaminopimelate epimerase. Length = 267 Score = 170 bits (432), Expect = 4e-43 Identities = 87/233 (37%), Positives = 119/233 (51%), Gaps = 23/233 (9%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGSIS 117 D +RI N DGSE + CGNG+RC RF L + + S+ T G+++ + DG + Sbjct: 42 DYTMRIFNSDGSEPEMCGNGIRCFARFIAELENLQGKNSYKIHTGAGLIIPEMQADGQVK 101 Query: 118 VDMGEPILDWKLIP--LARSFDK------MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 VDMGEPIL +P LA + D +D D G + VSMGNPH + Sbjct: 102 VDMGEPILKGPEVPTKLAATKDGAVVQAELDVD----GKTWLVT-----CVSMGNPHCVT 152 Query: 170 FVEDDLY--HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 F E +L L G H MF N +V S L +R WERG G T ACG+ Sbjct: 153 FGEKELKVDDLPLEKIGPKFEHHEMFPARTNTEFVQVVSRSHLKMRVWERGAGATLACGT 212 Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 ACA VVA+ + +R +V + GG L IEW +NH++MTG A+ + G++ Sbjct: 213 GACALVVAAVLEGRADRNCTVDLPGGPLEIEWRESDNHIYMTGPAELVFYGEI 265 >gnl|CDD|184158 PRK13577, PRK13577, diaminopimelate epimerase; Provisional. Length = 281 Score = 136 bits (344), Expect = 7e-33 Identities = 85/283 (30%), Positives = 135/283 (47%), Gaps = 18/283 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 + F K +GN LVID R + ++DAI + + HF D I L D Sbjct: 1 MKFYKYHALGNDYLVIDPRDAPFDPSADAIRRIC---HRHFGVGSDGI-LFGPLPSEGAD 56 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK-ENRDGSISV 118 +RI N DGSE + GNG+R R+L + + + FT ET GI+ + + +I V Sbjct: 57 FGLRIFNPDGSEAEKSGNGLRIFSRYLWDQGLVDDEPFTIETKGGIVECQVLDAGRTIQV 116 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 +MG+ IP+A ++ ++ + + ++GNPH + +++ Sbjct: 117 EMGKVSFGSTDIPVAGEDREVLNEKLDVDGRRLTY----CAATIGNPHCVVLLDE--ISE 170 Query: 179 DLA-SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 +LA G L+ HP F N+ +V ++ + WERG G T A GS++CA+ + Sbjct: 171 ELARELGPLIETHPRFPNRTNVQFLKVLDRNTIQIEIWERGAGYTLASGSSSCAAAAVAH 230 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 L + +++V M GG + IE D+ HV MTG K EG L Sbjct: 231 RLGLCDSSITVHMPGGQIDIEIKDDFHVSMTGPVTKVAEGSLS 273 >gnl|CDD|166363 PLN02722, PLN02722, indole-3-acetamide amidohydrolase. Length = 422 Score = 27.9 bits (62), Expect = 3.4 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%) Query: 129 LIPLARSFDKMD---RDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 +IP+A+SFD + RD + V H+ L+ P V+ P I ED Sbjct: 161 VIPMAQSFDTVGWFARDPVILKRVGHVLLQQP-DVNPIKPSQIIIAED 207 >gnl|CDD|181565 PRK08850, PRK08850, 2-octaprenyl-6-methoxyphenol hydroxylase; Validated. Length = 405 Score = 27.4 bits (61), Expect = 4.3 Identities = 11/29 (37%), Positives = 16/29 (55%) Query: 190 HPMFSEGVNLSIARVTSLESLDLRTWERG 218 HP+ +GVNL + SL L W++G Sbjct: 295 HPLAGQGVNLGLLDAASLAQEILALWQQG 323 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.322 0.137 0.420 Gapped Lambda K H 0.267 0.0721 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 4,756,320 Number of extensions: 297196 Number of successful extensions: 460 Number of sequences better than 10.0: 1 Number of HSP's gapped: 444 Number of HSP's successfully gapped: 9 Length of query: 296 Length of database: 5,994,473 Length adjustment: 93 Effective length of query: 203 Effective length of database: 3,984,929 Effective search space: 808940587 Effective search space used: 808940587 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 57 (25.7 bits)