RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780710|ref|YP_003065123.1| diaminopimelate epimerase [Candidatus Liberibacter asiaticus str. psy62] (296 letters) >2otn_A Diaminopimelate epimerase; DAP, lysine metabolism, X-RAY, lanthionine, isomeras; 2.40A {Bacillus anthracis str} (A:97-293) Length = 197 Score = 179 bits (455), Expect = 4e-46 Identities = 73/201 (36%), Positives = 105/201 (52%), Gaps = 14/201 (6%) Query: 78 GNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISVDMGEPILDWKLIP 131 GNG+RCV ++ ++ FT ET+ GI+ A+ + +DMG P L IP Sbjct: 1 GNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKIDMGAPRLTRAEIP 60 Query: 132 LARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190 + + R+ F + F VSMGNPHA+ FV DD+ L + G +L H Sbjct: 61 MLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEQAPLTTLGPVLETH 115 Query: 191 PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA--VSV 248 MF E VN+ + + E ++ R WERG G+T ACG+ ACA+VVAS K R ++V Sbjct: 116 EMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASILNGKMERGKEITV 175 Query: 249 KMLGGGLLIEWHDNNHVFMTG 269 + GG L+I W + +V M G Sbjct: 176 HLAGGDLMIAWTEEGNVLMKG 196 >2gke_A DAP epimerase, diaminopimelate epimerase; enzyme-inhibitor complex, covalently bound inhibitor, isomerase; HET: ZDP; 1.35A {Haemophilus influenzae} (A:) Length = 274 Score = 160 bits (406), Expect = 2e-40 Identities = 87/280 (31%), Positives = 127/280 (45%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH-FDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + T + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ +K + T +G +V D I V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDDNQIRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + IP + DD+ ++ Sbjct: 121 PIWEPAKIP------FTANKFEKNYILRTDIQTVLCGAVSMGNPHCVVQVDDIQTANVEQ 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E VN ++ + E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 N V V + GG L+IEW+ + ++MTGEA ++G + + Sbjct: 235 NNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274 >3ejx_A DAP epimerase, diaminopimelate epimerase, chloroplastic; PLP-independenet amino acid racemase, aziridino-diaminopimelate, isomerase; HET: ZDP; 1.95A {Arabidopsis thaliana} PDB: 3ekm_A* (A:) Length = 317 Score = 147 bits (372), Expect = 1e-36 Identities = 96/290 (33%), Positives = 136/290 (46%), Gaps = 13/290 (4%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASV 60 + ++ F K G+GN +++D R + + A D N D ++ Sbjct: 24 TGVLHFVKYHGLGNDFILVDNRDSSEPKITQEQAAKLCDRNFGVGADGVIFAMPG-VNGT 82 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGSIS 117 D +RI N DGSE + CGNG+RC RF+ + SFT T G++V + DG + Sbjct: 83 DYAMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGKHSFTIHTGAGLIVPEIQDDGQVK 142 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED---- 173 VDMG PIL + +P S +K V N VSMGNPH I F + Sbjct: 143 VDMGTPILKAQDVPTKLSGNKG-EAVVEAELVVDGVSWNVTCVSMGNPHCITFGKKGGPN 201 Query: 174 -DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 + +L G H MF N V S L +R WERG G T ACG+ ACA Sbjct: 202 LKVDDLNLPEIGPKFEHHEMFPARTNTEFVEVLSRSHLKMRVWERGAGATLACGTGACAL 261 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 VVA+ + +R +V + GG L IEW ++NH++MTG A+ + G + Sbjct: 262 VVAAVLEGRADRKCTVDLPGGPLEIEWKQEDNHIYMTGPAEAVFYGSALL 311 >3fve_A DAP epimerase, diaminopimelate epimerase; alpha/beta, amino-acid biosynthesis, cytoplasm, isomerase, lysine biosynthesis; 2.60A {Mycobacterium tuberculosis} (A:) Length = 290 Score = 126 bits (316), Expect = 5e-30 Identities = 55/296 (18%), Positives = 98/296 (33%), Gaps = 34/296 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH-FDQIMLIHDFQDASVDAFI 64 + FAK G N +++ +T+ + AL D ++ + A + Sbjct: 2 MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVL 61 Query: 65 --------------RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVA 108 N DGS Q CGNG+R +L + R F ++ G Sbjct: 62 DSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPV 121 Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 + + D+ + + V + V +GNPH Sbjct: 122 TCHHVEAAYADVSVDMGKANRL-------------GAGEAVVGGRRFHGLAVDVGNPHLA 168 Query: 169 FFVED--DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226 L + F +GVN+ + ++ +R ERGVG T +CG Sbjct: 169 CVDSQLTVDGLAALDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCG 228 Query: 227 SAACASVVASGCLHK-TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + A+ VA+ ++V + GG +++ + F+ G + G L Sbjct: 229 TGTVAAAVAALAAVGSPTGTLTVHVPGGEVVVTV-TDATSFLRGPSVLVARGDLAD 283 >1u0k_A Gene product PA4716; sctructural genomics, MCSG, protein structure initiative, structural genomics, PSI; 1.50A {Pseudomonas aeruginosa PAO1} (A:) Length = 288 Score = 124 bits (312), Expect = 1e-29 Identities = 45/288 (15%), Positives = 80/288 (27%), Gaps = 25/288 (8%) Query: 6 VD-FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 +D FA+ GN + V D D+ A Q I AF Sbjct: 10 LDVFAERPLTGNGLAVFDDASALDDAAXQAWTR-------ELRQFESIFLLPGDDPRAFR 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGSISVDMG 121 I E+ G+ + L + +T + + R GS Sbjct: 63 ARIFTLEEELPFAGHPLLGAAALLHHLRGGDNEQHWTLHLASKSVALRSVRAGSGFYAEX 122 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + + + F + N L P VVS G P+ + V + Sbjct: 123 DQGRAEFGATPDAGTCRWFAEAFSL-SANDLSGHPPRVVSTGLPYLLLPVTA-----EAL 176 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER-GVGLTAACGSAACASVVASGCLH 240 + + + + + ++ + RTW+ G+ A GSAA Sbjct: 177 GRARQVNDLQEALDKLGAAFVYLLDVDGREGRTWDNLGLVEDVATGSAAGPVAAYLVEYG 236 Query: 241 KTNRAVSVKML-------GGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 R + L ++ + V + G + +L Sbjct: 237 LAARGEPFVLHQGRFLERPSRLDVQVATDGSVRVGGHVQLLARAELLT 284 >1s7j_A Phenazine biosynthesis protein PHZF family; bacteria, structural genomics, PSI, protein structure initiative; 2.30A {Enterococcus faecalis V583} (A:) Length = 262 Score = 120 bits (300), Expect = 3e-28 Identities = 34/280 (12%), Positives = 70/280 (25%), Gaps = 36/280 (12%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FA+ GN V + + + ++ ++N + +R Sbjct: 11 FAEEVFKGNPAAVYVLE---KWLPEAVMQNIAIENNLSETAFTVKEGQ-----SYALRWF 62 Query: 68 NCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 + E+ CG+ L + ++ F + G L + + Sbjct: 63 TPER-EIDLCGHATLATAFVLFNYYSVAEETLHFTSQSGPLAVTKKEEYYYLDFPYILPE 121 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 + + +G +++ +A Sbjct: 122 RI----------------PILPEYEAALGTKIYEAYLGRDLFFVLKDEE----TVAKITP 161 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA----CGSAACASVVASGCLHK 241 + GV + + RT+ + + A Sbjct: 162 DFSALKALDLGVGVIVTASGDSVDFVSRTFFPKLRINEDPVCGSAHANLIPYWGKRLNQT 221 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 T A V GG L E N V + G AK +G+ + Sbjct: 222 TLSAYQVSPRGGFLTCEV-KENRVIIGGTAKLFAKGEAYL 260 >3edn_A Phenazine biosynthesis protein, PHZF family; diaminopimelate epimerase-like fold, alpha and beta protein class, structural genomics; HET: MSE; 1.50A {Bacillus anthracis} (A:) Length = 299 Score = 113 bits (283), Expect = 3e-26 Identities = 40/308 (12%), Positives = 72/308 (23%), Gaps = 39/308 (12%) Query: 1 MQSSMVD-FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS 59 + D F GN ++ I Sbjct: 4 INVFHYDAFTNKPNXGNPAGIVLDADGLTEEEXQRIAE-------KVGFNETSFVLSSEV 56 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGSI 116 D G E CG+G + L R ++ S T ET GIL + + + Sbjct: 57 AD-IRXRYFTPGYEXDLCGHGTVGTIYALRERGLLEEKASLTIETKAGILPIQIGVNENG 115 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 + + A S +++ + L S GN I V++ Sbjct: 116 ETFIKXRQTAPQFKDFAGSKEELAHSIGLEVNDLDVSL-PIVYGSTGNWTVIVPVKNL-- 172 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW---------ERGVGLTAACGS 227 P + + + LE+ D + G G+ Sbjct: 173 -DVCERXKPNNEVFPSVLKEIPNASIHPICLETYDEKVHXHGRHFSSAYAGTIEDPVTGT 231 Query: 228 AACASVVASG---------CLHKTNRAVSVKMLGGGLLIEWHDN-----NHVFMTGEAKK 273 A+ G + + + + + G A Sbjct: 232 ASGVXGAYYATYVEKDFDHEXELIVEQGQEIHKDGRVTVYVTKDVESEKLQIDIAGTAVY 291 Query: 274 EWEGKLDI 281 E ++ I Sbjct: 292 VKEFEVLI 299 >1qya_A ORFB, hypothetical protein YDDE; putative phenazine biosynthesis protein, epimerase, antibiotic biosynthesis protein, structural genomics; 2.00A {Escherichia coli} (A:) Length = 307 Score = 113 bits (282), Expect = 3e-26 Identities = 38/304 (12%), Positives = 77/304 (25%), Gaps = 34/304 (11%) Query: 1 MQSSMVD-FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS 59 Q VD F GN V+ DN++ + + Sbjct: 13 PQVYHVDAFTSQPFRGNSAGVVFPA---DNLSEAQMQLI----ARELGHSETAFLLHSDD 65 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSIS 117 D IR EV CG+ + + ++ G + Sbjct: 66 SDVRIRYFT-PTVEVPICGHATVAAHYVRAKVLGLGNCTIWQTSLAGKHRVTIEKHNDDY 124 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 E PL + H+ + L V + G+ + ++ + Sbjct: 125 RISLEQGTPGFEPPLEGETRAAIINALHLTEDDILPGLPIQVATTGHSKVMIPLKPE--- 181 Query: 178 YDLASFGNLLAKHPMFSEGVNLS----IARVTSLESLDLRTWERGVGLT--AACGSAACA 231 D+ + L S+ + + D R + +G+ G+A Sbjct: 182 VDIDALSPDLNALTAISKKIGCNGFFPFQIRPGKNETDGRMFSPAIGIVEDPVTGNANGP 241 Query: 232 SVVASGCLHKTNRAVSVKML----------GGGLLIEWHDNN----HVFMTGEAKKEWEG 277 + +V + G + + + V ++G A + Sbjct: 242 MGAWLVHHNVLPHDGNVLRVKGHQGRALGRDGMIEVTVTIRDNQPEKVTISGTAVILFHA 301 Query: 278 KLDI 281 + I Sbjct: 302 EWAI 305 >2azp_A Hypothetical protein PA1268; PA1268,APC5861,sulfur SAD, structural genomics, PSI, protein structure initiative; 2.13A {Pseudomonas aeruginosa} (A:) Length = 318 Score = 110 bits (275), Expect = 2e-25 Identities = 38/316 (12%), Positives = 76/316 (24%), Gaps = 43/316 (13%) Query: 5 MVDFAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDDNTHFDQIML------------ 51 + G ++ L + + + + Sbjct: 5 RIRIIDSHTGGEPTRLVIGGFPDLGQGDMAERRRLLGERHDAWRAACILEPRGSDVLVGA 64 Query: 52 -IHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA 108 + D A + N G + CG+G +V L + ET G + A Sbjct: 65 LLCAPVDPEACAGVIFFNNSG-YLGMCGHGTIGLVASLAHLGRIGPGVHRIETPVGEVEA 123 Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 + DGS+SV + + + G V G A Sbjct: 124 TLHEDGSVSVRNVPAYRYRRQVSVEVPGIGRVSGDIAWGGN-----WFFLVAGHGQRLAG 178 Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES----LDLRTWERGVGLTAA 224 ++ Y +A L + +G + + + + + + Sbjct: 179 DNLDAL-TAYTVAVQQALDDQDIRGEDGGAIDHIELFADDPHADSRNFVLCPGKAYDRSP 237 Query: 225 CGSAACASVV---ASGCLHKTNRAVSVKMLGGGLLIEWHDNN-------------HVFMT 268 CG+ A + A G L ++G + + ++ Sbjct: 238 CGTGTSAKLACLAADGKLLPGQPWRQASVIGSQFEGRYEWLDGQPGGPIVPTIRGRAHVS 297 Query: 269 GEAKKEWEGKLDIKTG 284 EA G Sbjct: 298 AEATLLLADDDPFAWG 313 >1tm0_A Proline racemase; structural genomics, alpha-beta protein THAT resembles double-beta barrel; 2.80A {Brucella melitensis 16M} (A:) Length = 350 Score = 103 bits (256), Expect = 4e-23 Identities = 30/347 (8%), Positives = 71/347 (20%), Gaps = 55/347 (15%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCH--DNITSDAINALSTDDN------------THFDQ 48 + ++ G VI + ++ D+ Sbjct: 4 TKVIHIVGCHAEGEVGDVIVGGVAPPPGETVWEQSRFIANDETLRNFVLNKPRGGVFRHV 63 Query: 49 IMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL------TSRMKRKSFTFETI 102 +L+ +D I G+ CV L + E Sbjct: 64 NLLVPP-KDPRAQXGFIIXEPAD-TPPXSGSNSICVSTVLLDSGIIAXQEPVTHXVLEAP 121 Query: 103 RGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVN-HLFLRNPFVVS 161 GI+ + + + + L D + Sbjct: 122 GGIIEVEAECRNGKAERISVRNVPSFADRLDAPLDVTGLGTIXVDTAYGGDSFVIVDAAQ 181 Query: 162 MGNPHAIFFVED--DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLD-------- 211 +G + ++ + L + ++S ++T + + Sbjct: 182 IGMKIEPGQARELAEIGVKITKAANEQLGFRHPERDWRHISFCQITEPVTREGDVLTGVN 241 Query: 212 LRTWERGVGLTAACGSAACASVVASGC--LHKTNRAVSVKMLGGGLLIEWHDNN------ 263 + G+ A K K + G D Sbjct: 242 TVAIRPAKFDRSPTGTGCSARXAVLHAKGQXKAGERFIGKSVLGTEFHCRLDKVLELGGK 301 Query: 264 ---HVFMTGEAKKEWEGKLDIK-----------TGKWIKKNEDDEAY 296 ++G A +L + + W + + + Sbjct: 302 PAISPIISGRAWVTGTSQLXLDPSDPFPHGYRLSDTWPRDELEHHHH 348 >1ym5_A YHI9, hypothetical 32.6 kDa protein in DAP2-SLT2 intergenic region; PHZF enzyme superfamily, double hot-DOG, structural genomics; 2.05A {Saccharomyces cerevisiae} (A:) Length = 300 Score = 101 bits (251), Expect = 1e-22 Identities = 43/294 (14%), Positives = 89/294 (30%), Gaps = 32/294 (10%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F + +GN + VI+ +N S + T+ + + D D +R I Sbjct: 13 FTEKPFMGNPVAVINFLEIDENEVSQEELQAI-ANWTNLSETTFLFKPSDKKYDYKLR-I 70 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 SE+ G+ + S E G + N +G IS Sbjct: 71 FTPRSELPFAGHPTIGSCKAFLEFTKNTTATSLVQECKIGAVPITIN-EGLISFKAPMAD 129 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED----DLYHYDL 180 + + ++K +F P ++ G + VED + + Sbjct: 130 YESISSEMIADYEKAIGLKFIKPPA---------LLHTGPEWIVALVEDAETCFNANPNF 180 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL--TAACGSAACASVVASGC 238 A + ++ + S ++R + + + CGS + A Sbjct: 181 AMLAHQTKQNDHVGIILAGPKKEAAIKNSYEMRAFAPVINVYEDPVCGSGSVALARYLQE 240 Query: 239 LHKTNRAVSVKM-------LGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDI 281 ++K + + + G +L ++ G A +GK+ + Sbjct: 241 VYKFEKTTDITISEGGRLKRNGLMLASIKKEADNSTSYYIAGHATTVIDGKIKV 294 >1w61_A B-cell mitogen; racemase, racemase pyridoxal phosphate-independent, stereo inversion, acid/base catalysis, homodimer, alpha/beta domains; 2.1A {Trypanosoma cruzi} PDB: 1w62_A (A:) Length = 414 Score = 98.1 bits (243), Expect = 1e-21 Identities = 34/321 (10%), Positives = 74/321 (23%), Gaps = 43/321 (13%) Query: 3 SSMVDFAKMEGIGNKILVIDMRG-CHDNITSDAINALSTDDNTHFDQI------------ 49 M G ++ A ++ + + Sbjct: 43 KKSFTCIDMHTEGEAARIVTSGLPHIPGSNMAEKKAYLQENMDYLRRGIMLEPRGHDDMF 102 Query: 50 -MLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--------TSRMKRKSFTFE 100 + D + D I ++ G + CG+ V ++ + Sbjct: 103 GAFLFDPIEEGADLGIVFMDTGG-YLNMCGHNSIAAVTAAVETGIVSVPAKATNVPVVLD 161 Query: 101 TIRGILVAKENRDGSISVDMGEPILDWKLIPLARS-FDKMDRDRFHIGPVNHLFLRNPFV 159 T G++ + ++ + L + + + V+ F N F Sbjct: 162 TPAGLVRGTAHLQSGTESEVSNASIINVPSFLYQQDVVVVLPKPYGEVRVDIAFGGNFFA 221 Query: 160 VSMGNPHAIFFVEDDLYHY-----DLASFGNL--LAKHPMFSEGVNLSIARVTSLESLD- 211 + I +L L + N +HP + + + Sbjct: 222 IVPAEQLGIDISVQNLSRLQEAGELLRTEINRSVKVQHPQLPHINTVDCVEIYGPPTNPE 281 Query: 212 -----LRTWERGVGLTAACGSAACASVV---ASGCLHKTNRAVSVKMLGGGLLIEW---H 260 + + + CG+ A + A G L V +LG Sbjct: 282 ANYKNVVIFGNRQADRSPCGTGTSAKMATLYAKGQLRIGETFVYESILGSLFQGRVLGEE 341 Query: 261 DNNHVFMTGEAKKEWEGKLDI 281 V + E + Sbjct: 342 RIPGVKVPVTKDAEEGMLVVT 362 >1xub_A Phenazine biosynthesis protein PHZF; biosynthetic protein; 1.30A {Pseudomonas fluorescens} (A:141-276) Length = 136 Score = 83.9 bits (207), Expect = 2e-17 Identities = 15/113 (13%), Positives = 28/113 (24%), Gaps = 10/113 (8%) Query: 157 PFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWE 216 + G H + L++ F + A + + Sbjct: 26 IEIYHNGPRHVFVGLPSI---DALSALHPDHRALSNFHDMAINCFAGAGRRWRSRMFSPA 82 Query: 217 RGVGLTAACGSAACASVVASGCLHKTNRAVSVKML-------GGGLLIEWHDN 262 GV AA GSAA + + V++L + + Sbjct: 83 YGVVEDAATGSAAGPLAIHLARHGQIEFGQPVEILQGVEIGRPSLMFAKAEGR 135 >2otn_A Diaminopimelate epimerase; DAP, lysine metabolism, X-RAY, lanthionine, isomeras; 2.40A {Bacillus anthracis str} (A:1-96,A:294-308) Length = 111 Score = 58.4 bits (141), Expect = 1e-09 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 7/77 (9%) Query: 6 VDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNT--HFDQIMLIHDFQDASVD 61 F KM G+GN + ++M + + +S + NT D ++LI A Sbjct: 24 FSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVS-NINTGIGADGMILICPSDVA--P 80 Query: 62 AFIRIINCDGSEVQSCG 78 +R+ N DGSE +SC Sbjct: 81 VKMRMFNNDGSEGKSCA 97 >3g7k_A 3-methylitaconate isomerase; DAPF family fold, closed conformation, open conformation; 2.70A {Eubacterium barkeri} (A:) Length = 391 Score = 47.8 bits (113), Expect = 2e-06 Identities = 44/361 (12%), Positives = 80/361 (22%), Gaps = 92/361 (25%) Query: 8 FAKMEGIGNKILVID-----MRGCHDNITSDAI-NALSTDDNTHFDQIMLIHDFQDASVD 61 F K + + D + G D D + A ++ +I D Sbjct: 21 FLKGNDLPADQELRDKVILRIFGSPDVRQIDGLAGADPL-----TSKLAIIGPSTHPDAD 75 Query: 62 AFIRIINCDGSEVQ-----SCGNGMRCVVRFL--------TSRMKRKSFTFETIRGILVA 108 ++ +CGN V F M R +L A Sbjct: 76 VDYTFAQVSITDAVVDYNGNCGNISAGVGPFAIDESFVKAVEPMTRVCIHNTNTGKLLYA 135 Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF---------- 158 + + + G+ +D A D L N Sbjct: 136 EVEVEDGKAKVSGDCKIDGVPGTNAPELMDF-SDTAGAATGKVLPTGNVVDVLSTSKGDI 194 Query: 159 ---VVSMGNPHAIFFVED-----DLYHYDLASFGNLLAK--------------------- 189 +V + NP +D + +LLA Sbjct: 195 DVSIVDVANPCIFVHAKDVNMTGTETPDVINGNADLLAYLEEIRAKCCVKIGMAATEKEA 254 Query: 190 --------------HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 P + L R V G+A + A Sbjct: 255 SEKSPAFPMIAFVTKPEDYVDFSTGNTISGDDVDLVSRLMFMQVLHKTYAGTATACTGSA 314 Query: 236 S---GCL-------HKTNRAVSVKMLGGGLLIEWHDNNH----VFMTGEAKKEWEGKLDI 281 + G + V + G + + + + A++ EG + + Sbjct: 315 ARIPGTIVNQVLRDTGDEDTVRIGHPAGVIPVVSIVKDGKVEKAALIRTARRIMEGYVYV 374 Query: 282 K 282 + Sbjct: 375 E 375 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006) Length = 120 Score = 27.8 bits (62), Expect = 1.6 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 10/27 (37%) Query: 200 SIARVTSLESL-DL---RTWERGVGLT 222 S+A V S+ESL ++ R G+T Sbjct: 1 SLADVMSIESLVEVVFYR------GMT 21 >2qv5_A AGR_C_5032P, uncharacterized protein ATU2773; structural genomics, unknown function, PSI-2, protein structure initiative; 1.90A {Agrobacterium tumefaciens str} (A:) Length = 261 Score = 25.9 bits (55), Expect = 6.4 Identities = 9/67 (13%), Positives = 16/67 (23%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 QS AK + + G + Q + + D S+ Sbjct: 165 AQSLSGGIAKAISAPQGFADVLLDGEVTEASILRKLDDLERIARRNGQAIGVASAFDESI 224 Query: 61 DAFIRII 67 A + Sbjct: 225 AAISKWS 231 >3b5q_A Putative sulfatase YIDJ; NP_810509.1, structural genomics, joint center for structural genomics, JCSG; HET: EPE; 2.40A {Bacteroides thetaiotaomicron vpi-5482} (A:1-56,A:111-321) Length = 267 Score = 26.0 bits (56), Expect = 6.5 Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 4/37 (10%) Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHP----MFSEGV 197 P+ + D L + ++G + S GV Sbjct: 17 PNFLIIQCDHLTQRVVGAYGQTQGCTLPIDEVASRGV 53 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.322 0.137 0.420 Gapped Lambda K H 0.267 0.0530 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,288,914 Number of extensions: 101750 Number of successful extensions: 333 Number of sequences better than 10.0: 1 Number of HSP's gapped: 286 Number of HSP's successfully gapped: 22 Length of query: 296 Length of database: 4,956,049 Length adjustment: 88 Effective length of query: 208 Effective length of database: 1,981,209 Effective search space: 412091472 Effective search space used: 412091472 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 54 (25.0 bits)