RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780710|ref|YP_003065123.1| diaminopimelate epimerase
[Candidatus Liberibacter asiaticus str. psy62]
(296 letters)
>3ejx_A DAP epimerase, diaminopimelate epimerase, chloroplastic;
PLP-independenet amino acid racemase,
aziridino-diaminopimelate, isomerase; HET: ZDP; 1.95A
{Arabidopsis thaliana} PDB: 3ekm_A*
Length = 317
Score = 211 bits (539), Expect = 1e-55
Identities = 96/292 (32%), Positives = 142/292 (48%), Gaps = 13/292 (4%)
Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDA 58
++ ++ F K G+GN +++D R + + A D N D ++ +
Sbjct: 22 KETGVLHFVKYHGLGNDFILVDNRDSSEPKITQEQAAKLCDRNFGVGADGVIFAMPGVNG 81
Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENRDGS 115
+ D +RI N DGSE + CGNG+RC RF+ + SFT T G++V + DG
Sbjct: 82 T-DYAMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGKHSFTIHTGAGLIVPEIQDDGQ 140
Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED-- 173
+ VDMG PIL + +P S +K + V+ + N VSMGNPH I F +
Sbjct: 141 VKVDMGTPILKAQDVPTKLSGNKGEAVVEAELVVDGVSW-NVTCVSMGNPHCITFGKKGG 199
Query: 174 ---DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
+ +L G H MF N V S L +R WERG G T ACG+ AC
Sbjct: 200 PNLKVDDLNLPEIGPKFEHHEMFPARTNTEFVEVLSRSHLKMRVWERGAGATLACGTGAC 259
Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
A VVA+ + +R +V + GG L IEW ++NH++MTG A+ + G +
Sbjct: 260 ALVVAAVLEGRADRKCTVDLPGGPLEIEWKQEDNHIYMTGPAEAVFYGSALL 311
>3fve_A DAP epimerase, diaminopimelate epimerase; alpha/beta, amino-acid
biosynthesis, cytoplasm, isomerase, lysine biosynthesis;
2.60A {Mycobacterium tuberculosis}
Length = 290
Score = 156 bits (395), Expect = 5e-39
Identities = 59/296 (19%), Positives = 104/296 (35%), Gaps = 40/296 (13%)
Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASV----- 60
FAK G N +++ +T+ + AL D D ++ + A
Sbjct: 4 FAKGHGTQNDFVLLPDVDAELVLTAARVAALC-DRRKGLGADGVLRVTTAGAAQAVGVLD 62
Query: 61 ---------DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK 109
D ++ N DGS Q CGNG+R +L + R F ++ G
Sbjct: 63 SLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPVT 122
Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
+ + D+ + + + R V +GNPH
Sbjct: 123 CHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLA-------------VDVGNPHLAC 169
Query: 170 FVE----DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225
D L D+ + F +GVN+ + ++ +R ERGVG T +C
Sbjct: 170 VDSQLTVDGLAALDVG--APVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSC 227
Query: 226 GSAACASVVASGC-LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
G+ A+ VA+ + ++V + GG +++ + F+ G + G L
Sbjct: 228 GTGTVAAAVAALAAVGSPTGTLTVHVPGGEVVVTV-TDATSFLRGPSVLVARGDLA 282
>2gke_A DAP epimerase, diaminopimelate epimerase; enzyme-inhibitor complex,
covalently bound inhibitor, isomerase; HET: ZDP; 1.35A
{Haemophilus influenzae} SCOP: d.21.1.1 d.21.1.1 PDB:
1gqz_A* 2gkj_A* 2q9h_A* 2q9j_A 1bwz_A
Length = 274
Score = 150 bits (380), Expect = 3e-37
Identities = 95/280 (33%), Positives = 141/280 (50%), Gaps = 12/280 (4%)
Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAFI 64
F+KM G+GN +V+D + T + I L+ + + FDQ++++ D +D
Sbjct: 2 QFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLA-NRHCGIGFDQLLIVEAPYDPELDFHY 60
Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISVDMGE 122
RI N DGSEV CGNG RC RF+T + +K + T +G +V D I V+MGE
Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDDNQIRVNMGE 120
Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
PI + IP ++ + + VSMGNPH + V+D ++
Sbjct: 121 PIWEPAKIPF-----TANKFEKNYILRTDIQTVLCGAVSMGNPHCVVQVDDI-QTANVEQ 174
Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
G LL H F E VN ++ + E + LR +ERG G T ACGS ACA+V
Sbjct: 175 LGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGLL 234
Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
N V V + GG L+IEW+ + ++MTGEA ++G + +
Sbjct: 235 NNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274
>2otn_A Diaminopimelate epimerase; DAP, lysine metabolism, X-RAY,
lanthionine, isomeras; 2.40A {Bacillus anthracis str}
Length = 308
Score = 148 bits (373), Expect = 2e-36
Identities = 98/290 (33%), Positives = 145/290 (50%), Gaps = 17/290 (5%)
Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTH--FDQIMLIHDFQDASV 60
S F KM G+GN + ++M A+ A ++ NT D ++LI A
Sbjct: 22 SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVA-- 79
Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENRDG 114
+R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ E +
Sbjct: 80 PVKMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVT 139
Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
+DMG P L IP+ + + + + VSMGNPHA+ FV DD
Sbjct: 140 LAKIDMGAPRLTRAEIPML---GEGETPFIRENFLYNNHRYAFTAVSMGNPHAVIFV-DD 195
Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
+ L + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+VV
Sbjct: 196 VEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVV 255
Query: 235 ASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
AS K R ++V + GG L+I W + +V M G A+ G + K
Sbjct: 256 ASILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 305
>1ym5_A YHI9, hypothetical 32.6 kDa protein in DAP2-SLT2 intergenic region;
PHZF enzyme superfamily, double hot-DOG, structural
genomics; 2.05A {Saccharomyces cerevisiae}
Length = 300
Score = 80.5 bits (197), Expect = 4e-16
Identities = 39/301 (12%), Positives = 91/301 (30%), Gaps = 41/301 (13%)
Query: 6 VD-FAKMEGIGNKILVIDMRGCHDNITSDAI-------NALSTDDNTHFDQIMLIHDFQD 57
VD F + +GN + VI+ +N S LS T F + D
Sbjct: 10 VDVFTEKPFMGNPVAVINFLEIDENEVSQEELQAIANWTNLS---ETTF-----LFKPSD 61
Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
D +RI + + FL + + +E + G++
Sbjct: 62 KKYDYKLRIFTPRSELPFAGHPTIGSCKAFLEFTKNTTATSLV--------QECKIGAVP 113
Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED---- 173
+ + E ++ +K + + + F++ P ++ G + VED
Sbjct: 114 ITINEGLISFKAPMADYESISSEMIADYEKAIGLKFIKPPALLHTGPEWIVALVEDAETC 173
Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
+ + A + ++ + S ++R + + + + +
Sbjct: 174 FNANPNFAMLAHQTKQNDHVGIILAGPKKEAAIKNSYEMRAFAPVINVYEDPVCGSGSVA 233
Query: 234 VASGCLHKTNRAVSVKML---------GGGLLIEWH----DNNHVFMTGEAKKEWEGKLD 280
+A + + G +L ++ ++ G A +GK+
Sbjct: 234 LARYLQEVYKFEKTTDITISEGGRLKRNGLMLASIKKEADNSTSYYIAGHATTVIDGKIK 293
Query: 281 I 281
+
Sbjct: 294 V 294
>1u0k_A Gene product PA4716; sctructural genomics, MCSG, protein structure
initiative, structural genomics, PSI; 1.50A {Pseudomonas
aeruginosa PAO1} SCOP: d.21.1.2 d.21.1.2
Length = 288
Score = 76.2 bits (186), Expect = 9e-15
Identities = 42/290 (14%), Positives = 80/290 (27%), Gaps = 23/290 (7%)
Query: 6 VD-FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
+D FA+ GN + V D + A+ A + + + + + D AF
Sbjct: 10 LDVFAERPLTGNGLAVFDD---ASALDDAAMQAWTRELR--QFESIFLLPGDDP--RAFR 62
Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISVDMGE 122
I E+ G+ + L + + VA +
Sbjct: 63 ARIFTLEEELPFAGHPLLGAAALLHHLRGGDNEQHWTLHLASKSVALRSVRAGSGFYAEM 122
Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
+ + N L P VVS G P+ + V +
Sbjct: 123 DQGRAEFGATPDAGTCRWFAEAFSLSANDLSGHPPRVVSTGLPYLLLPVTAEA-----LG 177
Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER-GVGLTAACGSAACASVVASGCLHK 241
+ + + + + ++ + RTW+ G+ A GSAA
Sbjct: 178 RARQVNDLQEALDKLGAAFVYLLDVDGREGRTWDNLGLVEDVATGSAAGPVAAYLVEYGL 237
Query: 242 TNRAVSVKML-------GGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284
R + L ++ + V + G + +L G
Sbjct: 238 AARGEPFVLHQGRFLERPSRLDVQVATDGSVRVGGHVQLLARAELLTSAG 287
>1qya_A ORFB, hypothetical protein YDDE; putative phenazine biosynthesis
protein, epimerase, antibiotic biosynthesis protein,
structural genomics; 2.00A {Escherichia coli} SCOP:
d.21.1.2 d.21.1.2 PDB: 1sdj_A 1qy9_A
Length = 307
Score = 66.9 bits (162), Expect = 5e-12
Identities = 28/240 (11%), Positives = 63/240 (26%), Gaps = 20/240 (8%)
Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISV 118
D IR EV CG+ + + ++ G +
Sbjct: 67 DVRIRYFT-PTVEVPICGHATVAAHYVRAKVLGLGNCTIWQTSLAGKHRVTIEKHNDDYR 125
Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
E PL + H+ + L V + G+ + ++ ++
Sbjct: 126 ISLEQGTPGFEPPLEGETRAAIINALHLTEDDILPGLPIQVATTGHSKVMIPLKPEVDID 185
Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLES-LDLRTWERGVGLTAACGSAACASVVASG 237
L+ N L ++ ++ D R + +G+ + + +
Sbjct: 186 ALSPDLNALTAISKKIGCNGFFPFQIRPGKNETDGRMFSPAIGIVEDPVTGNANGPMGAW 245
Query: 238 CLHKTNRAVSVKML------------GGGLLIEWH----DNNHVFMTGEAKKEWEGKLDI 281
+H +L G + + V ++G A + + I
Sbjct: 246 LVHHNVLPHDGNVLRVKGHQGRALGRDGMIEVTVTIRDNQPEKVTISGTAVILFHAEWAI 305
>1xub_A Phenazine biosynthesis protein PHZF; biosynthetic protein; 1.30A
{Pseudomonas fluorescens} SCOP: d.21.1.2 d.21.1.2 PDB:
1u1w_A* 1u1v_A* 1u1x_A* 1xua_A* 1t6k_A
Length = 298
Score = 57.7 bits (138), Expect = 3e-09
Identities = 32/232 (13%), Positives = 57/232 (24%), Gaps = 21/232 (9%)
Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
DA IRI E+ G + L + ET G + + R +
Sbjct: 77 DALIRIFTPVN-ELPFAGAPLLGTAIALGAHTDNHRLYLETQMGTIAFELERQNGSVIAA 135
Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
L R + + + G H + L
Sbjct: 136 SMDQPIPTWTALGRDAELLKALGISD------STFPIEIYHNGPRHVFVGLPS---IDAL 186
Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
++ F + A + + GV AA GSAA +
Sbjct: 187 SALHPDHRALSNFHDMAINCFAGAGRRWRSRMFSPAYGVVEDAATGSAAGPLAIHLARHG 246
Query: 241 KTNRAVSVKML-------GGGLLIEWHDNN----HVFMTGEAKKEWEGKLDI 281
+ V++L + + V ++G G + +
Sbjct: 247 QIEFGQPVEILQGVEIGRPSLMFAKAEGRAEQLTRVEVSGNGVTFGRGTIVL 298
>3edn_A Phenazine biosynthesis protein, PHZF family; diaminopimelate
epimerase-like fold, alpha and beta protein class,
structural genomics; HET: MSE; 1.50A {Bacillus
anthracis}
Length = 299
Score = 52.8 bits (125), Expect = 1e-07
Identities = 27/301 (8%), Positives = 76/301 (25%), Gaps = 35/301 (11%)
Query: 6 VD-FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
D F +GN ++ D +T + + ++ F++ + + A D +
Sbjct: 9 YDAFTNKPNMGNPAGIVLDA---DGLTEEEMQRIAEKVG--FNETSFVLSSEVA--DIRM 61
Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRK----SFTFETIRGILVAKENRDGSISVDM 120
R + + + + + + + N +G + M
Sbjct: 62 RYFTPGYEMDLCGHGTVGTIYALRERGLLEEKASLTIETKAGILPIQIGVNENGETFIKM 121
Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
+ +K + + + S GN I V++ +
Sbjct: 122 RQTAPQFKDFA---GSKEELAHSIGLEVNDLDVSLPIVYGSTGNWTVIVPVKNLDVCERM 178
Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLES----LDLRTWERGVGLTAACGSAACASVVAS 236
+ ++ + + + G + + V+ +
Sbjct: 179 KPNNEVFPSVLKEIPNASIHPICLETYDEKVHMHGRHFSSAYAGTIEDPVTGTASGVMGA 238
Query: 237 GCLHKTNRAVSVKM-----------LGGGLLIEWH-----DNNHVFMTGEAKKEWEGKLD 280
+ +M G + + + + + G A E ++
Sbjct: 239 YYATYVEKDFDHEMELIVEQGQEIHKDGRVTVYVTKDVESEKLQIDIAGTAVYVKEFEVL 298
Query: 281 I 281
I
Sbjct: 299 I 299
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 30.7 bits (69), Expect = 0.43
Identities = 21/112 (18%), Positives = 32/112 (28%), Gaps = 48/112 (42%)
Query: 22 DMRGCHDNITSDAINALSTD----------DNTHFDQIMLIHDFQDASVDAFIRIINCDG 71
D+R +I+ ++ + TH I DF G
Sbjct: 467 DLRVLSGSISERIVDCIIRLPVKWETTTQFKATH------ILDF---------------G 505
Query: 72 SEVQSCGNGMRCVVRFLTSRMKRKSFTFE-T-IRGILVAKENRDGSISVDMG 121
G G + LT R K + T +R I+ D + D G
Sbjct: 506 P-----G-GASGLGV-LTHRNK------DGTGVRVIVAG--TLDINPDDDYG 542
Score = 26.4 bits (58), Expect = 7.1
Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 20/124 (16%)
Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS---MGNP 165
+EN I E I+D KL + F +++ H ++ F ++S P
Sbjct: 1685 RENYSAMIF----ETIVDGKL-KTEKIFKEINE---H--STSYTFRSEKGLLSATQFTQP 1734
Query: 166 HAIFFVEDDLYHYDLASFGNL-----LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG 220
A+ +E + DL S G + A H + S+A V S+ESL + RG+
Sbjct: 1735 -ALTLMEKAAFE-DLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMT 1792
Query: 221 LTAA 224
+ A
Sbjct: 1793 MQVA 1796
>3b5q_A Putative sulfatase YIDJ; NP_810509.1, structural genomics, joint
center for structural genomics, JCSG; HET: EPE; 2.40A
{Bacteroides thetaiotaomicron vpi-5482}
Length = 482
Score = 28.2 bits (61), Expect = 2.2
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 4/46 (8%)
Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHP----MFSEGVNLSIARVTS 206
P+ + D L + ++G + S GV S A V
Sbjct: 17 PNFLIIQCDHLTQRVVGAYGQTQGCTLPIDEVASRGVIFSNAYVGC 62
>1auk_A Arylsulfatase A; cerebroside-3-sulfate hydrolysis, lysosomal
enzyme, hydrolase; HET: NDG NAG; 2.10A {Homo sapiens}
SCOP: c.76.1.2 PDB: 1n2k_A* 1n2l_A* 1e1z_P* 1e2s_P*
1e3c_P* 1e33_P*
Length = 489
Score = 27.8 bits (60), Expect = 2.7
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHP----MFSEGVNLSIARVTS 206
P+ + DDL + DL +G+ + P + + G+ + V
Sbjct: 3 PNIVLIFADDLGYGDLGCYGHPSSTTPNLDQLAAGGLRFTDFYVPV 48
>1p49_A Steryl-sulfatase; steroid biosynthesis, steroid sulfatase, estrone
sulfate, dehydroepiandrosterone sulfate, human placental
enzyme; HET: ALS BOG NAG; 2.60A {Homo sapiens} SCOP:
c.76.1.2
Length = 562
Score = 27.8 bits (60), Expect = 3.0
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHP----MFSEGVNLSIARVTS 206
P+ I + DDL D +GN + P + S GV L+ S
Sbjct: 6 PNIILVMADDLGIGDPGCYGNKTIRTPNIDRLASGGVKLTQHLAAS 51
>3ed4_A Arylsulfatase; structural genomics, PSI-2, protein structure
initiative, NEW YORK structural genomix research
consortium NYSGXRC, transferase; 1.70A {Escherichia
coli}
Length = 502
Score = 27.6 bits (60), Expect = 3.4
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHP----MFSEGVNLSIARVTS 206
P+ + + DDL + DLA++G+ + K P + EGV + +
Sbjct: 28 PNLVIIMADDLGYGDLATYGHQIVKTPNIDRLAQEGVKFTDYYAPA 73
>2vyo_A ECU11_0510, chitooligosaccharide deacetylase; CE4 esterase, native
protein, microsporidian, chitin deacetylase, hydrolase,
inactive; 1.50A {Encephalitozoon cuniculi}
Length = 254
Score = 27.4 bits (60), Expect = 4.1
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 28 DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
D+ + + + D H I+L+HD Q+A ++
Sbjct: 160 DDPVGEFESMIEGSDPKHHSFIILMHDGQEADTSRLENMV 199
>2qzu_A Putative sulfatase YIDJ; Q64XZ4_bacfr, arylsulfatase, BFR123, NESG,
structural genomics, PSI-2, protein structure
initiative; 1.70A {Bacteroides fragilis YCH46}
Length = 491
Score = 26.9 bits (58), Expect = 4.9
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHP----MFSEGVNLSIARVTS 206
P+ +F + D + G K P + SEG+N + A +
Sbjct: 28 PNLVFIMADQYRGDAIGCIGKEPVKTPHLDKLASEGINFTNAISSY 73
>3h6j_A Neuraminidase, sialidase; six-bladed beta-propeller, cell WALL,
glycosidase, hydrolase, peptidoglycan-anchor, secreted;
1.60A {Pseudomonas aeruginosa} PDB: 2w38_A
Length = 438
Score = 26.9 bits (59), Expect = 6.0
Identities = 6/55 (10%), Positives = 12/55 (21%)
Query: 18 ILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGS 72
+ +I R SD S + + ++ G
Sbjct: 35 LYLIYRRATEHVGGSDGRVVFSKLEGGIWSAPTIVAQAGGQDFRDVAGGTMPSGR 89
>2xrf_A Uridine phosphorylase 2; transferase; 2.30A {Homo sapiens}
Length = 303
Score = 26.3 bits (57), Expect = 8.2
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 159 VVSMGNPHAIFFVEDDLYHYDLAS 182
V + NP+ ED LYH DL +
Sbjct: 3 FVHVKNPYLDLMDEDILYHLDLGT 26
>2j13_A Polysaccharide deacetylase; family 4, peptidoglycan, hydrolase,
bacterial cell WALL, carbohydrate esterase; 1.7A
{Bacillus anthracis} SCOP: c.6.2.3
Length = 247
Score = 26.3 bits (57), Expect = 9.2
Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 2/63 (3%)
Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
+ + + +D + A N + T H I+L+H + +A
Sbjct: 165 LTKEMGYYNVFWSLAFLDWKVDEQRGWQYAHNNVMT--MIHPGSILLLHAISKDNAEALA 222
Query: 65 RII 67
+II
Sbjct: 223 KII 225
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.322 0.137 0.420
Gapped
Lambda K H
0.267 0.0504 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,603,365
Number of extensions: 118633
Number of successful extensions: 339
Number of sequences better than 10.0: 1
Number of HSP's gapped: 314
Number of HSP's successfully gapped: 26
Length of query: 296
Length of database: 5,693,230
Length adjustment: 92
Effective length of query: 204
Effective length of database: 3,462,782
Effective search space: 706407528
Effective search space used: 706407528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.9 bits)